Pseudomonas protegens CHA0, PFLCHA0_c46940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCCTGGAGCTGGGCGCCGACGACTACCTGGGCAAGCCTTTCAGCCCCCGGGAGCTGCAGGCGCGGATCAAGGCCCTGCTGCGGCGCGTGCAGTTCACC CAGGAGCGGGTTGTCGGCGAGGTGCTGTGCTTCGACGAATGGCGCCTGGATGTGATCAGCCACCGGCTGTTCCACAACGATGGCGAGGAGGTGATTCTCT CCGGCGCCGACTTCGCTCTGCTCAAGCTGTTTCTCGACCATCCCCAGGAAATCCTCGATCGCGACACCATCGGCAATGCCACCCGCGGGCGTGACCTGAT GCCCCTGGATCGCATCGTCGACATGGCGGTGAGCCGCCTGCGCCAGCGTCTGCGTGACACCGAAAAGCCGCCGCGGCTGATTCGCACCGTGCGCGGCAGT GGCTATCAATTGGCAGCCAATGTGGTTGCCGGCAATGGCCACTGAGGCATTGCGCAAAGTGCTGCGGCGCCTGCCGGTGCCCCGTTCCCTGCTGGGGCGG
|
|
| DNA Sequence for Gene |
>PFLCHA0_c46940
ATGCTGCTTTTGACCCTGCTGGCGGTGCTGTTCGCCCAGGCGCTGTCCAGCGTGATCTGGGTTTCCCAGCTGCGCGCCACCCAGCTCGAAGGGCTGGTGA CCAGCGCCCGCAGCCTGGCCCACTCGATGACCGCCAGCGTCAGTTACCTGCGTTCGTTGCCGGTGGCGTACCGGCCCCTGGTGCTGGACCAGTTGCGCAG CATGGGCGGTACGCGGTTTGTCGTGACCCTGAACGACAAGCCCCTGGGCATGCAGGTGCTGCCCGCCACCCCGCGCAAAGAAGCGGTGTTGCAAGCCGTG GAGCAGGTGTTGCGCCAGTCCCTGGGCAATGACGCGGATATCTCCGTGACCTTCGTCAGCCCCGATGACCTGCGGATCTTCAATGGCGGCCTCAAGCTCG ACGAATTGCCGCGCTCCTGGGCCCATTACGCCCTGACCCTGGAACCGGTAAACCCGCCGGTGCTGGTGACCCAGATCCAGATGGCGCCGGGAGAGTGGCT GTACATCGCCTCGCTGTTGCCCGAGCCCTATACCAGCCTGGAAGAACAGGGCCTGCCGGCACAGCAGGTGTGGTTCATCCTGCTCACCAGCGGTTTTCTG CTGTTGTTCATCGGCCTGTTGGTGCATTGGCAGAGCCGGCCCCTCAAGCGCCTGGCCCGGGCGGCGCGGGACATGTCCCTGGGGGCCGACGTCGAGCCGG TAGCGGAGGGCGGCGGCAGTGAAGTGGTGGAGGTGGGCCGGGCCTTCAACAGCATGCGCGAGCGCATCAGCCGCTACCTGACCGAGCGCAGCCAGCTGTT CAGCGCCATCTCCCATGACCTGCGCACCCCCATCACCCGCTTGCGCCTGCGGGTGGAATTGCTGGAGGACGAGCAACTGCAGGCCAAGTTCGGGCGCGAC CTGGATGAACTGGAGTTGCTGGTCAAGGGCGCGCTGCAGTGCGTCAAGGACACCGACATCCACGAGAACATCGAGCCGGTGGACCTCAATCAGGTACTCG ACTGCCTGGTAGAGCCTTATCTGGCACCCAACGGCAATGGCCGCGTGACCCAACAGGGCCGGGCCCTGGCCAGCTACCCGGGCAAGCCCCTGGCGCTCAA GCGCTGCATGGGCAACCTGATCGACAATGCCCTGAAGTACGGACAGAACGCTCACCTGCACATCGAAGACGACGACAGCGGCTTTGTCCTGCATGTCGAC GACGAAGGCCCCGGCGTACCGGAGCAGCGCCTGGAGCAAGTCTTCGAGCCGCACTTCCGTCTTGCTGGCCAGCAGCAGGGCTACGGCCTGGGCCTGGGGA TTGCCCGCAACATCGCCCACAGCCATGGCGGCGAAGTCAGCCTGCAGAACCTGCGCGAAGGCGGCCTGCGCGTAACCCTTTACCTGCCCCGGACCTTCGA CTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTGCCTGCCGTTGTAAGCGCTGGCTTGTGTCGGAGCTGGCTTGCCAGCGAAGGCGTCCTCAAGGGCACCACAGGGCTCAAGGGCCTCTTCGCCGGCAAG CCGGCTCCTATGGGGGAGTGCAATGTCACGGTTTGGTGACATTGCGCTGGTCCTTTGTTACCTGCGGTCGCAGGCGGCTTGATTAGACTCAAGCCTTCGA TAAAAACAACAACAGGTCACCCATGGACGCTCTCTCCCTGCCATTCAGCAGTTGGCTGAATGCCCCTGCACATCAGGCCTGGCTCGCCGCCGAAGGCCTG CGCCTGCTGGATTTTGCCAAGGCCTCACGGCTTCCTGCGGGCTTTGGCAACCTCGATGAACAGGGCCGCCTGCCCAGCGGCGCCCAGGCCGAAACCATGA ACACCGCGCGCATGACCCACAGCTTCGCCATGGCCCATATCCAGGGCCTGCCGGGTTATGCCGCTCTGGTGGACCACGGCATCGCCGCCCTCGGCGGGCC
|
|
| Amino Acid Sequence |
>sensor histidine kinase
MLLLTLLAVLFAQALSSVIWVSQLRATQLEGLVTSARSLAHSMTASVSYLRSLPVAYRPLVLDQLRSMGGTRFVVTLNDKPLGMQVLPATPRKEAVLQAV EQVLRQSLGNDADISVTFVSPDDLRIFNGGLKLDELPRSWAHYALTLEPVNPPVLVTQIQMAPGEWLYIASLLPEPYTSLEEQGLPAQQVWFILLTSGFL LLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVAEGGGSEVVEVGRAFNSMRERISRYLTERSQLFSAISHDLRTPITRLRLRVELLEDEQLQAKFGRD LDELELLVKGALQCVKDTDIHENIEPVDLNQVLDCLVEPYLAPNGNGRVTQQGRALASYPGKPLALKRCMGNLIDNALKYGQNAHLHIEDDDSGFVLHVD DEGPGVPEQRLEQVFEPHFRLAGQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPRTFD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|