Pseudomonas protegens CHA0, PFLCHA0_c42420 (qseB3)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCAGCCCAGCTTGACCTTGCCGCTGGCGGCGGCCGGCAGCTTCACTTCCAGGCCCTGGCGATACACCGTCTGCTGGCCGAAGAATTCGTCGCTGTGGT CTTCACCGGCCGGCAGGGTGGGTTGCAGCTCTGGCGCCACGCCGTCGAACTTCAGGCGCTTCTGATACAGGTAGTAGCCGTCGGCGATCTGCCAGAACAG CTGGGTTTCCCCCGAAGGCAGGCGCTCGGAGGTGAAGACGAAGGCCTTGCCCACCGGCAGGAAGTCGGGCTTGACCTCGAACGGGTTGTTGCCGGCGTGC GCCAGTGTGGTGAAGAGCATGAACAACAGGAGAAACAATCGACGCATGGCCAAGCCTTAAACCGGTGCAAGTTGCGAGCACAATGGCCGGTCCTGATTAA CCGATGATTAACCATACTTGGCTTGTGGCCAGGAAACGGCGGGCATAATGTCCGCTTAATCCGCAGCCCGCTTAATCAACGCCTTTGTACAGGACCGACC
|
|
| DNA Sequence for Gene |
>PFLCHA0_c42420
|qseB3
ATGCACGTACTTGTCTGTGAAGATGATGAGCTGATTGCCAGCGGGATAGTCGCCGGCCTCACGGCCCAGGGCCTGACGGTCGAGCATGTGGCCACCGCTT CGGCAGCGCGGGCCATGCTCGGCGTGGCCGATTTCGACGTGATGGTACTGGATCTTGGCCTGCCGGATGAAGACGGTTTGAAGCTGCTCAAGCAGCAGCG CCAGCAGGGCCTGGAGATTCCGGTGCTGATCCTCACCGCCCGCGACTCGGTGACCGATCGGGTCGATGGCTTGCAGGCCGGTGCCGACGATTACCTGCTC AAGCCGTTCGACCTGCGGGAACTGGCGGCGCGCCTGCACACCCTGTTGCGCCGGGTGGCGGGGCGCAGCGTCAACCTCATTGAACACGGACGCCTGACCT ATGACCCGAGCACCCGGGAAACCCTGCTCGGTGGCCAACCGGTGGACCTCTCGCGGCGCGAGCAATCCCTGCTCCAGGCTCTGCTGCACAACCGTGGCCG GGTGCTGTCCAGCGAGCAACTCAAGGACAGCGTCTACGGTTTCAACGATGAGCTGGAGAGCAACGCGCTGAATGTGCACATCCACCACCTGCGGCGCAAA CTCGGCAACGGCATCGTTGAAACCGTGCGCGGCCTCGGCTATCGCCTGGGCCCGGCCGACGGTGAGGAGAACCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTGAGAAGCCTGCGCCTGCGCCTGAGCATGACCCTGGGCGCTGCCTTCATCCTGATCTGGGCCCTGGCCGCGGCCTGGATGCTCAGTGACCTGCGCAACC AGATGATGTTTTCCCTGGACCAGCGACTGGTCGCCTCGGCGCGCATGGTCGCCGGGCTGCTGGAGCAGATGCCGGCGCTGCCGTCCCATGGCCCGAGCAA CCAGATCAACAGCGCGGCCCTGACCATCCCCGGCGGCATGGCCTGCCAGGTCAGTTCCCTGCGCGGGCAGATCCTGGCCCGCAGCCACAGCACTCCGGAG CACCCGCTGGAAGCCGAGAAACTGGGCTTTCACGACCAGATGATCGACGGCGCGCCCTGGCGCACCTTCACCCTGGTGCGCGGCGACATGCGCATCACCA CCGCGGATCGCCAGGTCGAGCGCGAAGCCCTGAACATGTCGGTGCTGCTGGCGGCTTCGGTGCCGGTGGGCGTGGCCCTGCTCGGCTGCCTGTGGCTGCT
|
|
| Amino Acid Sequence |
>transcriptional regulatory protein QseB
MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGLKLLKQQRQQGLEIPVLILTARDSVTDRVDGLQAGADDYLL KPFDLRELAARLHTLLRRVAGRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSVYGFNDELESNALNVHIHHLRRK LGNGIVETVRGLGYRLGPADGEENR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|