Pseudomonas protegens CHA0, PFLCHA0_c34420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCCTGGACAGCCACGCTCGGGTAGTCGGCGCAGGCACCTTCCAGCGCCACGCCGGCGGTCACGTCGAAGTGCCCGCTGGCATCGGACTCGTAGTTGGA ATAGACGCCGTAGACGAACGAATCAGCCTGGCGAGGGCTGATCTTGTCGAACAGCCCCTCGACATAGAAGCGCTGCCACATCGGCCCGATCCGGGCGCTG TCGGCCTGTTGCTCGGCGGCGTTGAGGGTCCTTACTTGCAGGCCTGCAACGCTGAACGGCAGTACTTCACGCAGTTTTACATCCATGGCCAGCCTTCCTT GAGGGGTGCGATGAGGAAAAATATCCGCCGCAGTCTAGCGCCGGATCGACGCCGCCGACAGCCGTCGGCAGCGGCCGCCGTATCGGTTGCAAAGGCCTGG AATCGAGCCCCGTGGAAAAGTCAGCTGGCCTCGGGGCGCCATCTCCTGATAAAAACCACGGGCTGCATCGTCTAAACCTGCCGACGGAGAATTCCCGCAA
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| DNA Sequence for Gene |
>PFLCHA0_c34420
ATGAGCCAATGGACTGATCGCCGCCTCTTAGACCTGCTGGGTATCGCCCTGCCCATCATCCAAGCGCCCATGGCCGGCCCCTCCGGCTCCGCCATGGTGA TCGGCGCCTCCCGGGCCGGTGCTCTGGGCTCCCTGCCCTGCGCCATGCTCGACGCCGGGCAGATCCGCCAGGAAGTACAGGTGATTCGCTCAGCCACGCA GAACCCATTGAACCTGAATTTCTTCTGCCACCAGGTGCAGCCCGTCGATGCCGAACACGAGCAACGCTGGAAGAACGCCCTGGAGCCCTACTATCGCGAG CTGGGCGCCGACTTCGATGCTCCGACCCCGGTCAGCAACCGCGCGCCCTTCGATGAGAGCACCTGCCAACTGGTGGAAGAGTTGCGCCCTGAAGTCGTGA GTTTCCACTTCGGCCTTCCAGAGCCTTCGTTGCTGGCCCGGGTCAAGGCCACCGGAGCCAAGGTGCTGTCCTCGGCCAGCACCGTCGATGAAGCGCTCTG GCTGGAGGAGCGCGGCTGCGACGCGATCATCGCCATGGGCTACGAAGCCGGCGGCCACCGGGCAATCTTCCTCGGCGACGATCTCAACAGCCAGGTCGGC ACCATGGCCCTGGTGCCGCAGATCGTCGACGCGGTGCAACTGCCGGTGATTGCCGCCGGCGGCATCGGCGATGCCCGGGGCATCGTCGCGGCGCTGGCCC TCGGAGCCTCGGCGGTGCAACTGGGCACCGCTTACCTGTTCACCCCGGAAGCCAAGGTCAGCGCCGCCCACCACCATGCCCTGCGCCACGCCAAGGAAAG CGAAACCGCGTTGACCAACCTGTTCACCGGGCGCCCGGCCCGGGGCATCGTCAACCGCGTCATGCGCGAAATCGGCCCCATCAGCCCGTTGGCGCCGGCC TTCCCCCGGGCCGGCGGCGCCTTGATGCCGCTGCGTGCCAAGGACGAGGCGGACTTCGCCAACCTCTGGTCCGGCCAGGCCCTGCGCCTGGGGGTGGAAC TGCCCGCCTACGAACTGACCCTGCGCCTGGCCGAACAAACCCTGGCACAACTGCGCAGACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCACTAGAGCCGCGATCCACATCGCGGCCCGGGCAACAAGCGCTGGCAACAGAGTTCCGTTCATCGACAAATCGCTATATATTCCGCTATATAGCGATT CCCCCTCGCCTTGGTGCAGGCCCCTTCCAATAACTCACTGCCCAACGCATCCGTCCCCCCAATGGAGCTGTTTGATGAACCTTCGCGCCTCAGGTTTTGC CCCGACTTGCCTCGCCGCCCTGCTCGCTGTCTTCGCCCTGGGTTCGGCCCAGGCCGATGAAGTTCAGGTCGCGGTGGCCGCCAACTTCACCGCACCGATC CAGGCGATTGCCGCCGACTTCGAGAAAGACACCGGGCACAAACTGGTGGCCGCCTACGGCGCTACCGGGCAGTTCTATACCCAGATCAAGAACGGCGCGC CTTTTGAAGTCTTCCTCTCGGCCGACGACAGCACCCCGCAAAAGCTCGAAAGCGAAGGCGACATCGTCAAGGGCTCGCGCTTCACCTACGCCATCGGCAC
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| Amino Acid Sequence |
>putative nitronate monooxygenase
MSQWTDRRLLDLLGIALPIIQAPMAGPSGSAMVIGASRAGALGSLPCAMLDAGQIRQEVQVIRSATQNPLNLNFFCHQVQPVDAEHEQRWKNALEPYYRE LGADFDAPTPVSNRAPFDESTCQLVEELRPEVVSFHFGLPEPSLLARVKATGAKVLSSASTVDEALWLEERGCDAIIAMGYEAGGHRAIFLGDDLNSQVG TMALVPQIVDAVQLPVIAAGGIGDARGIVAALALGASAVQLGTAYLFTPEAKVSAAHHHALRHAKESETALTNLFTGRPARGIVNRVMREIGPISPLAPA FPRAGGALMPLRAKDEADFANLWSGQALRLGVELPAYELTLRLAEQTLAQLRRR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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