Pseudomonas protegens CHA0, PFLCHA0_c33010 (acrD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas protegens CHA0, complete genome. [Details]
DNA Sequence Upstream of Gene
GCCGGGCCTTCCGCGCCGGCCAGTTGCAGCAGGTGGGCAAGGACCAGGCCAAGGCGACCCTGATCCAGGACGACGGCAGCCTCTACCCGCTGCCGGGCAA GCTGTTGTTCGCCGATATCAGCGTTGACCCGAGTACCGGGCAGATCATCCTGCGCAGCGAGTTCCCCAACCCGGACCTCGACCTGCTGCCCGGCAGTTTC GTGCGCGTGCGCCTGGAACAGGCGGTCAACCAGCAAGGCATCAGCGTGCCGCAGCGGGCCATCCAGCGCGACAGCGCCGGCATCGCCCAGGTGCTGCTGG TGGATGCGCAAAACAACGTGGTGCAGCACCCGGTGCAACTGGGTGGAGTGCAGAACGATCGCTGGATCGTCACCGAGGGCCTCAAGCCCGGTGACCGGGT GATTGTCGAAGGCCTGCAACACGCCCGCCCCGGCGAGCCGGTGGAAATCGACGCCAGCCCCCTTGCGCACGTCCAGAACCCTGGCCAGTAGGTAGTACAC
DNA Sequence for Gene
>PFLCHA0_c33010 |acrD
ATGCCGCAATTCTTTATTGACCGCCCGGTATTCGCCTGGGTGGTCGCCTTCTTCATCCTGTTGGCCGGCGCCCTGGCGATCCCCCAACTGCCGGTGGCGC AATACCCCACCGTGGCCCCGCCGCAGATCGAGATCTACGCCGCCTACCCGGGCGCCTCGGCGCAGACCCTGGACGAATCGGTGGTCAGCCTGATCGAGCA GGAGCTCAATGGTGCCGACCACCTGCTGTACTTCTCGTCCCAGAGCAGCCTCGGCAGCGCCACCATCACCGCCACCTTCCAGCCGGGTACCAACCCGGAA CTGGCCCAGGTGGACGTGCAGAACCGTCTCAAGGCGGTGGAACCGCGCCTGCCCCAGGCGGTGACCCAGCAGGGCCTGCAGGTGGAGAAAGTCTCCGCCG GCTTCCTCTTGCTGATCACCCTGACCTCCAGTGACGGCCGCCTGAACGATGTCGCCCTCAGCGACTACCTGGCGCGCAACGTGATGAACGAGATCCGCCG CCTCGATGGCGTCGGCAAGGCCCAGTTGTACGGTGCCGAGCGGGCCATGCGGATCTGGCTCGACCCGCAGAAACTGATCGGTTTCAACCTGACCCCGGCC GACGTCAACGCCGCGGTGGCGGCGCAGAACGCCCAGGTTCCGGCCGGCAGCATCGGCGACCTGCCCAACCCTGCCAGCCAGGAAATCACCGCGACCATCC TGGTCAAGGGCCAGCTTTCCAGCCCTGAAGAGTTTGCCGATATCGTCCTGCGGGCCAACCCCGACGGCTCCACGGTACGCATCGGCGATGTGGCCCGGGT GGAAGTCGGCAGCCAGGAATACCAGTACGGCACCCGCCTGAACGGCAAGCCGTCCACCGCGGTGGGCGTGCAGTTGTCCCCCGGGGCCAACGCGTTGAAT ACCGCGACCTTGATCCGCGCCAAGATGGACGAGCTGTCGCGCTATTTCCCGGCCGGCGTGGAATACAAGATCCCCTACGACACCTCGCCCTTCGTCAAGG TCTCGATCACCAAGGTGCTCTACACCCTGGCCGAAGCCATGGTGCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACATCCGCTACACCCTGATCCC CACCCTGGTGGTGCCCGTGGCCCTGATGGGCACCTTCGCCACCATGCTGGCCCTGGGGTTCTCGATCAACGTGCTGACCATGTTCGGCATGGTGCTGGCC ATCGGCATCCTGGTGGACGATGCCATCGTGGTGGTGGAGAACGTCGAGCGGATCATGGCCTCCGAAGGCCTGTCGCCCAAGGAAGCCACGCGCAAGGCGA TGCAGCAGATCACCGGGGCCATCATCGGCATCACCCTGGTGCTGGTGGCGGTGTTCATCCCCATGGCCTTCATGCCCGGCTCGGTGGGGGTGATCTACCA GCAGTTCTCGCTGTCCATGGCCACCTCGATCCTGTTCTCGGCGTTCCTCGCCCTGACCCTGACCCCGGCCCTGTGCGCCACCCTGCTCAAGCCCATTGCG GCGGGCGAACACCATGAACGCACGGGGTTCTTCGGCTGGTTCAACCGGCGCTTCGAACGCCTGAGCGACAGCTATCAGGGCGGCGTGACCTATGCCCTCA AGCGTACCGGCCGCTACCTGCTGATCTACCTGGCGCTGCTGGCGATCATGGCGCTGCTGTTCAGCCGCCTGCCCTCCTCCTTCCTGCCAGTGGAGGACCA GGGCTACACCATCACCGACATCCAGCTGCCACCTGGTGCCAGCCAGAACCGCACGATCAAGGTGGTGGAGCAGATCGAAGCGCACAACGCCAGCGAACCG GGAGTCGGCGACAGCACCATCATTCTCGGCTTCAGCTTCTCGGGTAACGGGCAGAACGCCGCGCTGGCCTTCACCACGCTCAAGGACTGGTCGCAACGGG GCAGCGAGGATTCGGCGATGTCCATCGCCGACCGCGCCAACGCCGCCCTCGGCGCGATCAAGGATGCCGTGGTGTACGCCGTGCTGCCGCCGCCGATCGA TGGCCTGGGCACCTCCAGCGGCTTTGAGTTCCGCCTGCAGGACCGTGGCGGCGTCGGCCACGCGGCCCTGATGCAGGCCCGGGACGAGCTGCTCAAGGCC ACGGAAAAGAGCCCGATCCTGGCCAACGTCCGGGAAAGTGCCCTGGCCGAAGCGCCGCAGGTGCAACTGGAGGTCGACCGCAAGCAGGCCAACGCCCTGG GCGTGTCCTTTGCCGATATCGGCAGCCTGCTGTCCACCGCCCTGGGGTCGTCCTACGTCAACGACTTCCCCAACCAGGGGCGGATGCAGCGGGTGGTGAT CCAGGCCGAAGGCGACCAGCGCAGCCAGGTCGAAGACTTGCTGCGCCTGAACGTGCGCAACAGCGCCGGCAAGATGGTGCCGCTGTCGGCCTTCGTCCGC GCCAGCTGGAGCCTGGGCCCTGCGCAACTGACCCGCTACAACGGCTACCCGGCCATTGCCGTCTCCGGCGAGCCGGCCCCTGGCCACAGTACCGGTGAAG CCATGCAGGAAATCGAACGGCTGGTGGCGCAGTTGCCCACCGGGCTGGGCCTGGAATGGACCGGCCTGTCACTCCAGGAACGGCTGTCCGGCAGCCAGGC GCCGATGCTGCTGGGCCTGTCGCTGCTGATCGTGTTCCTGTGCCTGGCGGCGCTCTACGAGAGCTGGTCGATTCCCACCTCGGTGCTGCTGGTGGTGCCC CTGGGGGTACTGGGCGCAGTGCTGGCGGTGAGCCTGCGCGGCATGCCCAACGACGTGTTCTTCAAGGTCGGCCTGATCACCATCATCGGCCTGTCAGCGA AGAACGCGATCCTGATCATCGAGTTCGCCAAGAGCCTGTACGACGAAGGCCATGATCTGATCGATGCCACGGTGCAGGCTGCACGCCTGCGCCTGCGCCC CATCGTCATGACCTCGCTGGCGTTCATCCTCGGCGTGGTGCCCCTGGCCATCGCCACCGGCGCCAGCTCCGCCAGCCAGCAGGCGATCGGTACCGGGGTG ATCGGCGGCATGATCACCGCAACCCTGGCAGTGATCTTCGTGCCGGTGTTCTTCGTGGTGGTGATGAAACTGGTGAAACGCGGTTCGTCCAAGGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CATCGCTGCATGGGGTCCCGGTTCCGGGGCCCCTTCTTCTCTTGCCCGCCTCTTCTCGTCTCAGGCCGCCATGGCCGGGCATACCCGTGCCTGTGGGCAA TCCAGGGCGAAAGGCCCGGGAAAGGCCGCAGCGGATTTGCCCGGTGGATTGCCCGCCAGCAGCGCCGGAGCCTTGGCCGCCTGGCTGTGATGGGCGATCT GGTGATTGCATTCGATGGCCCGCGCCAATGCTCCGGCCGAACCCTGGCCCAGCCCCAGCAGGCTGGTGCCATTGGTGAAGAACGCGAGGAAGGCGGTGAT CATCAGACGGCGCCCTTTCATGGCCGTCTCCCCGCTTCGGCATGGAGTACCGGGCCCTGGCCGCTTGCCGCGCCGGAATCAATCAACGCAGCGCTCGGCA GGCCCGCAGCCAGGCTGGCCCAGAGCATCAGAAGCAGATAAAGCCCCAGCGCCAGGTAGGCGCCGTACTTGGCGGAACTGAGGATCGAACGGGCCATGGT
Amino Acid Sequence
>putative aminoglycoside efflux pump
MPQFFIDRPVFAWVVAFFILLAGALAIPQLPVAQYPTVAPPQIEIYAAYPGASAQTLDESVVSLIEQELNGADHLLYFSSQSSLGSATITATFQPGTNPE LAQVDVQNRLKAVEPRLPQAVTQQGLQVEKVSAGFLLLITLTSSDGRLNDVALSDYLARNVMNEIRRLDGVGKAQLYGAERAMRIWLDPQKLIGFNLTPA DVNAAVAAQNAQVPAGSIGDLPNPASQEITATILVKGQLSSPEEFADIVLRANPDGSTVRIGDVARVEVGSQEYQYGTRLNGKPSTAVGVQLSPGANALN TATLIRAKMDELSRYFPAGVEYKIPYDTSPFVKVSITKVLYTLAEAMVLVFLVMFLFLQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLA IGILVDDAIVVVENVERIMASEGLSPKEATRKAMQQITGAIIGITLVLVAVFIPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIA AGEHHERTGFFGWFNRRFERLSDSYQGGVTYALKRTGRYLLIYLALLAIMALLFSRLPSSFLPVEDQGYTITDIQLPPGASQNRTIKVVEQIEAHNASEP GVGDSTIILGFSFSGNGQNAALAFTTLKDWSQRGSEDSAMSIADRANAALGAIKDAVVYAVLPPPIDGLGTSSGFEFRLQDRGGVGHAALMQARDELLKA TEKSPILANVRESALAEAPQVQLEVDRKQANALGVSFADIGSLLSTALGSSYVNDFPNQGRMQRVVIQAEGDQRSQVEDLLRLNVRNSAGKMVPLSAFVR ASWSLGPAQLTRYNGYPAIAVSGEPAPGHSTGEAMQEIERLVAQLPTGLGLEWTGLSLQERLSGSQAPMLLGLSLLIVFLCLAALYESWSIPTSVLLVVP LGVLGAVLAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDATVQAARLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGV IGGMITATLAVIFVPVFFVVVMKLVKRGSSKD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site