Pseudomonas protegens CHA0, PFLCHA0_c14870 (degP2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGCAGCAGTGCCCGCAAGGATCCGGAAACCAAATCCATGGTCAACAGCCTGCTGTATGACGATGGTCTTGCGCGCTTTTCGGTGTTTCTCGAGCCGC TCAACGGCGCATCGGTCACCGATACCCGCACTCAGCTCGGACCTACGGTGGCTGTATCACGCCGCCTGACTACCCCCGATGGCGAGATGATGGTCACGGT GGTCGGGGAGATCCCCATTGGTACTGCTGAACGTATTGCGCTGTCGATGCGTTCCGATACCACTGCCAAGCAATGAGCCTTTGTTGGTTGTGTAAGAGGT CAGTGATGCCCGCTCCACAATTGAGAAGATGAAATGTTTGGTCAGCAATTTCATTTGCAAAATTCCCAGAGTTTTTCTATAGGTCAGAACCCCCTCGGTT CTGACCTTATTTGTCGTTCCTGGAACAAAGATGCCGCCCCTGCAGTTTCGGTATTTGCTGTTCCATATCGCTTAACCACGCTCGTCGTAACGGGAGCCGT
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| DNA Sequence for Gene |
>PFLCHA0_c14870
|degP2
ATGTCGATACCACGCTTGAAGTCCTACTTCACCATTCTTGCCACCGTGCTGGTGCTTGGGCAGGCCGTTTCTGCCCAGGCGGCCGAGCTGCCTGATTTCA CCCAACTGGTCGAGCAGGCCTCGCCTGCGGTGGTGAACATCAGTACCACGCAGAAACTGCCGGACCGCCGGGTTTCCAACTCGGCGCAGATGCCCGACCT CGAAGGCCTGCCGCCAATGCTGCGCGAGTTCTTCGAACGGGGCATGCCACAGCCACGCTCTCCGCGCGGGGATCGTCAGCGCGAAGCGCAGTCGCTGGGT TCCGGGTTCATCATCTCCGCGGACGGTTATATCCTTACCAACAACCACGTGATCGCCGATGCGGACGAAATTCTTGTGCGTCTGGCCGATCGCAGTGAGC TGAAAGCCAAGCTGATCGGTACCGATCCACGCTCTGACGTAGCACTGCTGAAAATCGATGGCAAAGACCTGCCGGTGCTGAAACTGGGTAAATCCCAGGA CCTCAAGGCCGGCCAGTGGGTGGTGGCCATCGGCTCGCCGTTCGGCTTCGACCATACCGTGACCCAGGGTATCGTCAGTGCCATCGGTCGCAGTCTGCCG AACGAAAACTACGTGCCGTTCATCCAGACCGACGTGCCGATCAACCCGGGCAACTCCGGTGGCCCGCTGTTCAACCTGGCCGGTGAAGTGGTGGGGATCA ACTCGCAGATTTACACCCGCTCCGGTGGTTTCATGGGCGTGTCTTTCGCCATCCCGATCGATGTGGCGATGGACGTTTCCAACCAGCTGAAAACCGGTGG CAAAGTCAGCCGTGGCTGGCTTGGCGTGGTAATCCAGGAGGTCAACAAGGACCTGGCTGAATCCTTCGGCCTGGAGAAACCGGCCGGCGCGCTGGTGGCA CAGATCCAGGATGATGGCCCGGCGGCCAAGGGCGGCCTGCAAGTGGGGGACGTGATCCTCAGCCTCAATGGCCAGCCCATCGTCATGTCGGCCGACCTGC CGCACCTGGTAGGCGCGCTGAAGGCCGGGGCCAAGGCCAACCTGGAAGTGATCCGCGACGGCAAGCGCAAGAATGTCGAGCTGACCGTCGGCGCTATTCC TGAAGAAGACAAAGACCTGAGCATGCTGCCCAAGTCGGGTGTCGAGCGCAGCAGCAACCGTCTGGGTGTAGCGGTGGTCGAGCTCAACGATGAGCAGAAG AAAGCCTTCGACCTCAAGGGCGGGGTGGTCATCAAGGAAGTCCAGGACGGTCCTGCGGCGCTGATCGGCCTGCAGCCGGGCGACGTGATCACTCACCTGA ACAATCAGGCGATCACTTCGGCGAAGGAGTTCACTGAAATCGCCAAGGCATTGCCGAAGAACCGCTCGGTGTCCATGCGGGTACTGCGTCAGGGGCGAGC CAGCTTCATCACCTTCAAGCTGGCCGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCGCCAGTCCCTGAGGTTGCCCAATAAAAAGCCCGCCTCGTAAGAGGCGGGCTTTTTTGTGGCTTGCGTCAATGTCAGCGCATCATGTCCTTGACCATC TGTTCCTGGTCCATCATCTCGCGCTGACGAGCGTCGATCCTCGACGACAGGGGGAAGTTGCTGCCGGCCCGGCGCTTGGCGAAGTCCAGCTGCTGGATGG CTTGGCGATAGTCGCCCACCAGTGCGAAGTACTCGGCTCGGGCCTGGTGCAGGCCGATGATATTGCCCGACAGGCCGCGGGTTTCCGCCACCAGGTACCA GACATCCGGGTCGTCCGGGCGGCTTTTCAGCAGGCCTTCCAGGGCCTTTTCGGCATCGGCCGGGCGGTTCTGCTTGAGCAGCAGGTCCACGCGGATCTGG TTCAAGGGGTAGTTGCCCGGGTACAGGTTGAGCATCCTTTCGACCCGAGTCTGCGCGTCTGGCAGTCGGCTGTTGGCCATGTCCAGTTCGATCTGAGCCA
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| Amino Acid Sequence |
>putative serine protease do-like protein
MSIPRLKSYFTILATVLVLGQAVSAQAAELPDFTQLVEQASPAVVNISTTQKLPDRRVSNSAQMPDLEGLPPMLREFFERGMPQPRSPRGDRQREAQSLG SGFIISADGYILTNNHVIADADEILVRLADRSELKAKLIGTDPRSDVALLKIDGKDLPVLKLGKSQDLKAGQWVVAIGSPFGFDHTVTQGIVSAIGRSLP NENYVPFIQTDVPINPGNSGGPLFNLAGEVVGINSQIYTRSGGFMGVSFAIPIDVAMDVSNQLKTGGKVSRGWLGVVIQEVNKDLAESFGLEKPAGALVA QIQDDGPAAKGGLQVGDVILSLNGQPIVMSADLPHLVGALKAGAKANLEVIRDGKRKNVELTVGAIPEEDKDLSMLPKSGVERSSNRLGVAVVELNDEQK KAFDLKGGVVIKEVQDGPAALIGLQPGDVITHLNNQAITSAKEFTEIAKALPKNRSVSMRVLRQGRASFITFKLAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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