Pseudomonas protegens CHA0, PFLCHA0_c13720 (ydhP)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTGCAGATGTGCGAGATAATTCATGGACGCAGCTTAGCACTGCGACCAACATATCGTTATAACCCGATATACCGATAAGTAATGATTTAAGACCAAAA TCATATTGGTATATCGCGAAATAACGATTTAAATTTCGCTTCATCGCGATACAACGTTTCACAAAAAACGAGCACCGCCATGTCCCTCGACCTCGACGAA ATAATAAAAGCCCTGGCACATCCGGTTCGCAGGGAAATCCTGCGCTGGCTGAAAGACCCGACTGTCGAATTTCCCGATCAGGCTCACAGCAATGAGCACG GCGTCTGCGCCGGGCAGATCGACCAACGCTGCGGCCTGTCGCAGTCGACCGTGTCCGCCCACCTCGCCACCTTGCAACGCGCAGGCCTGATCAGCAGCCG GAAAGTCGGCCAATGGCATTTTTTCAAACGCAACGAGGAAACCATCCAGCAGTTCCTCACGCAAATGAGCCAACAGCTCTGACCTGACAAGGACCCGACA
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| DNA Sequence for Gene |
>PFLCHA0_c13720
|ydhP
ATGCCCCTTTCGCTTCTCATCCTGGCCTTGAGTGCCTTCGCCATCGGTACCACCGAGTTCGTCATCATGGGCCTGCTGCCCGATGTGGCGGCGGACCTCG GGGTGTCGATTCCCGGCGCCGGCTGGCTGGTCACCGGCTACGCCCTTGGGGTGGCCATCGGCGCGCCCTTCATGGCCCTGGCCACTGCCCGCCTGCCCCG CAAGGCAGCCCTGGTGGCGCTGATGGGAATCTTCATTGTCGGCAACCTGCTGTGTGCACTGGCCAGTGATTACAACGTGCTGATGTTTGCCCGGGTGATC ACCGCGCTGTGCCACGGTGCCTTCTTTGGTATCGGTTCAGTGGTGGCCGCCGGCCTGGTGCCCGCCAACAAGCGCGCTTCGGCCGTGGCCCTGATGTTCA CCGGCCTGACCCTGGCCAACGTCCTTGGCGTGCCCCTGGGCACCGCCCTGGGCCAGGCAGCGGGCTGGCGCTCGACCTTCTGGGTGGTGACGGTGATCGG CGTACTGGCGCTGATCGGCCTGCTGCGCTTCCTGCCGGCCAAGCGCGACGAGGAAAAACTCGACATGCGTGCGGAGTTGGCGGCCCTCAAGGGCGCGGGT ATCTGGCTGTCCCTGAGCATGACCGCGCTGTTCGCCGCATCGATGTTCACCCTCTTCACCTACGTTGCACCGCTGCTCGGTGATGTCACCGGTGTCTCGC CCAAGGGCGTGACCTGGACCCTGCTGCTGATCGGCCTGGGCCTGACCCTGGGCAACATCATCGGCGGCAAACTGGCGGACAAGCGCCTGGGCGCCACCCT GATCGGCGTGTTCGCGGCCATGGCCGTGGTCTCCACCGTACTGACCTGGACCAGCGTGGCGCTGATCCCCACCGAGATCACCCTGTTCCTCTGGGCCACC GCTTCGTTTGCCGCAGTGCCGGCGTTGCAGGTCAACGTAGTGACCTTCGGCAAGGCCGCACCGAACCTGGTTTCGACCCTGAACATCGGCGCCTTCAACA TCGGCAATGCCCTGGGTGCCTGGGTCGGCGGCAGCGTCATCGCCCACGGCTTCGGCCTGACCAGCGTGCCGTTGGCGGCTGCGGCCCTGGCGATCCTGGC CCTGCTGGTGACGCTGATTACCTTTCGCCAGGGCGGTAACGCCGAACTGGCTCCTGCAACCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTCTCCCTATCCCTTAAAGAAGGCTGCATTCCATGACGACTCTCTTTGATCCGATCAAACTCGGCGATCTCGAACTGTCCAACCGCATCATCATGGCG CCGCTGACCCGCTGCCGCGCCGATGCCGGCCGCGTACCCAACGCGCTGATGGCCGAGTACTACGTACAACGGGCTTCCGCCGGCCTGATCCTCAGCGAGG CCACCTCGGTGACCCCCATGGGCGTGGGCTACCCGGACACCCCCGGCATCTGGTCCAACGACCAGGTGCGTGGCTGGGCCAATGTGACCAAGGCAGTACA CGGCGCCGGCGGCAAGATCTTCCTGCAGCTGTGGCACGTCGGACGCATCTCCCACCCGTCCTATCTGAACGGCGAAACCCCGGTGGCACCCAGCGCCCTC CAGCCCAAGGGGCATGTCAGCCTGGTGCGCCCACTGGCCGACTTCCCAACTCCGCGGGCCCTGGAAACCGCTGAGATCGCCGACATCGTCGACGCCTACC
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| Amino Acid Sequence |
>inner membrane transport protein YdhP
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATARLPRKAALVALMGIFIVGNLLCALASDYNVLMFARVI TALCHGAFFGIGSVVAAGLVPANKRASAVALMFTGLTLANVLGVPLGTALGQAAGWRSTFWVVTVIGVLALIGLLRFLPAKRDEEKLDMRAELAALKGAG IWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWTLLLIGLGLTLGNIIGGKLADKRLGATLIGVFAAMAVVSTVLTWTSVALIPTEITLFLWAT ASFAAVPALQVNVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTSVPLAAAALAILALLVTLITFRQGGNAELAPATH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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