Pseudomonas protegens CHA0, PFLCHA0_c13670 (ttgB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042908 xenobiotic transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR32063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00873 AcrB/AcrD/AcrF family IPR001036 Acriflavin resistance protein 1 1009 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 606 620 2.1E-93
Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain - - 1 500 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 428 451 2.1E-93
Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like - - 116 314 0.0
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 550 653 1.36E-29
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 453 476 2.1E-93
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 21 113 1.57E-27
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 656 840 2.46E-26
SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 165 254 1.11E-20
FunFam G3DSA:3.30.2090.10:FF:000002 Efflux pump membrane transporter - - 708 796 7.3E-40
SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains - - 118 313 3.09E-24
FunFam G3DSA:1.20.1640.10:FF:000002 Efflux pump membrane transporter - - 841 1006 2.6E-77
FunFam G3DSA:3.30.70.1430:FF:000002 Efflux pump membrane transporter - - 555 655 4.6E-37
Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain - - 656 854 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 319 342 2.1E-93
FunFam G3DSA:3.30.2090.10:FF:000001 Efflux pump membrane transporter - - 163 261 4.5E-42
SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 706 792 3.4E-23
Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain - - 21 804 0.0
PANTHER PTHR32063 - IPR001036 Acriflavin resistance protein 1 1018 0.0
Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 163 261 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 374 398 2.1E-93
FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter - - 305 494 7.1E-72
SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain - - 815 1007 2.75E-45
Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain - - 555 655 0.0
SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain - - 279 480 7.19E-48
FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter - - 21 120 2.3E-34
NCBIfam TIGR00915 JCVI: efflux RND transporter permease subunit IPR004764 Multidrug resistance protein MdtF-like 1 1023 0.0
Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain - - 501 1006 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 19 37 2.1E-93
Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains 708 796 0.0
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 537 554 2.1E-93
PRINTS PR00702 Acriflavin resistance protein family signature IPR001036 Acriflavin resistance protein 346 367 2.1E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.