Pseudomonas protegens CHA0, PFLCHA0_c13550 (pcaF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTGGGTTTCCTTGGCGCGGCCCAGGTCGACCGTTTCGGCAATATCAACACCACCGTGGTCGGCGACTACCACCGGCCCAAGGTGCGCCTGCCGGGCG CCGGCGGTGCTCCGGAGATCGCCGGTTCGGCCAAGAGCGTGCTGATCATCCTCAAGCAATCCTCGCGCTCCTTCGTCGACAAGCTGGACTTCGTGACTTC GGTCGGCCACGGCGAAGGCGGCGATTCGCGCAAGCGCCTGGGCCTGCCAGGGGCGGGGCCGGTGGGCATCATCACCGACCTGTGCATCATGGAGCCGGAA GCCGGTACCCACGAATTCATCGTCACTTCGCTGCACCCGGGCGTGACCCGCGAGCAGGTGGTGGCCGCCACTGGCTGGGCGATCCGCTTCGCCGACCAGG TGGCCGAGACCGCAGCACCCACCGAGGTTGAACTGACCGCCCTGCGTGACCTGGAAGCGCGCACCGCCGCGGCCCATGGCCAAGCCCCTGGAGAAGCCTG
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| DNA Sequence for Gene |
>PFLCHA0_c13550
|pcaF
ATGCGCGACGTATTCATCTGCGATGCCATTCGCACCCCCATCGGCCGTTTTGGTGGCGGCCTCTCGACAGTGCGCGCTGACGACCTGGCGGCGCTGCCGA TCAAGGCCTTGATGGAGCGCAACCCCAGCGTGGACTGGAGCTCCGTGGACGAGGTGTTCCTCGGCTGCGCCAACCAGGCCGGCGAGGACAACCGCAACGT GGCGCGCATGGCTCTGCTGCTGGCGGGCCTGCCGGACAGCGTGCCCGGCGTCACCCTCAACCGTCTCTGCGCCTCGGGCATGGACGCCATCGGCACGGCG TTCCGCGCCATTGCCAGCGGCGAGATGGAGCTGGCGATTGCCGGTGGCGTCGAGTCCATGTCCCGCGCGCCCTTTGTCATGGGCAAGGCCGATACCGCCT TTTCGCGCAACATGAAGATGGAAGACACCACCATCGGCTGGCGTTTCATCAACCCGCTGATGAAGGCCCAGTACGGTGTGGATGCCATGCCGCAGACCGC CGACAACGTGGCGGATGACTACAAAGTGTCCCGCGCTGACCAGGACGCCTTCGCCCTGCGCAGCCAGCAGCGTGCCGCGGTGGCCCAGGCCGCCGGTTTC TTCGCTGAGGAAATCGTTGCGGTGCGCATCGCCCACAAGAAGGGCGAGAGCGTGGTGGAGCAGGACGAGCATCCCCGTGCCGACACCACCCTGGAAGCCT TGGCCAAGCTCAAGCCGGTCAACGGCCCGGACAAGACCGTCACCGCCGGCAATGCCTCCGGGGTCAACGACGGTGCCGCGGCGCTGATCCTGGCCTCGGC CGAAGCCGTCAAGAAACACGGCCTGACCCCACGTGCGCGAGTACTGGGCATGGCCAGCGCCGGGGTTGCGCCGCGGGTCATGGGCATCGGCCCGGTGCCG GCAGTGCGCAAGCTGATCGAGCGCCTGGGCGTGGCGGTCAGCGACTTCGACGTGATCGAACTCAACGAAGCCTTCGCCAGCCAGGGCCTGGCGGTGCTGC GCGAGCTGGGCCTGGCGGACGATGCGCCCCAGGTCAATCCCAACGGCGGCGCGATTGCCCTGGGCCATCCCCTGGGCATGAGCGGCGCGCGGTTGGTGCT GACGGCTTTGCATCAGCTGGAAAAGAGCGGCGGTAAAAAAGGCCTGGCGACCATGTGCGTCGGCGTCGGCCAAGGGCTGGCGCTGGCTATCGAGCGCGTT TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGCCTGCCTTATATAAGAAGAGAACGAGGAACCACCATGAGTGACAAGCCCGGTTACCGGCGCCCGCAAGCGGGCACTCAGCCTGATTACCTGCACCCG GCCTACCAGTCGACCAACACCCGCTCGCCGTCCAAGCCGCTGGTGTTCATTCCCCACTCGCTGTCGGAAATCACCGGCCCGAGCATCGGCGCCGAGTCGA TCCAGGAACGGGACAACGACCTGACGGCCCAGCACGTAGGGCAGCCCCAGGGCGAGCGCATCATCATCCACGGCCGGGTTCTGGACGAGAACGGCCTGCC GGTGCCGGGCATCCTGGTGGAGATCTGGCAGGCCAACGCGGCCGGTCGCTACAACCACGACCGCGACTTGCACGATGCGCCCCTGGACCCGAACTTCACC GGCACCGGGCGCACCGTGACCGACGCCGACGGCTGGTACCAGTTCCAGACCATCAAGCCCGGGGCCTACCCCTGGGGCAACCACCACAATGCCTGGCGCC
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| Amino Acid Sequence |
>beta-ketoadipyl-CoA thiolase PcaF
MRDVFICDAIRTPIGRFGGGLSTVRADDLAALPIKALMERNPSVDWSSVDEVFLGCANQAGEDNRNVARMALLLAGLPDSVPGVTLNRLCASGMDAIGTA FRAIASGEMELAIAGGVESMSRAPFVMGKADTAFSRNMKMEDTTIGWRFINPLMKAQYGVDAMPQTADNVADDYKVSRADQDAFALRSQQRAAVAQAAGF FAEEIVAVRIAHKKGESVVEQDEHPRADTTLEALAKLKPVNGPDKTVTAGNASGVNDGAAALILASAEAVKKHGLTPRARVLGMASAGVAPRVMGIGPVP AVRKLIERLGVAVSDFDVIELNEAFASQGLAVLRELGLADDAPQVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGKKGLATMCVGVGQGLALAIERV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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