Pseudomonas protegens CHA0, PFLCHA0_c12200

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas protegens CHA0, complete genome. [Details]
DNA Sequence Upstream of Gene
CGGCTGACCCTTGTAGGAAAAACGCGTGGTGCCATCAGGCATCAGGCCCTTGCCCTGGGTGGCGCGAATGGCCTGACAGAGGTTGGTCTTGCCCGACAGG CAGAATTTGCACTTGCCGCATTCCGGGGTGTACAGCGGGATCACATGGTCACCCACAGCCACCGAGGTCACGCCCTCGCCCACCGCCTCAACCACCGCAC CGCCTTCATGACCGAGGATCGCCGGGAAGATGCCTTCAGGGTCGGCACCAGACAGCGTGTAGGCGTCGGTGTGGCAGACGCCGGAGGCGACGACCCGCAG CAGCACCTCGCCCGCCTTGGGCATGGCGACATCCACTTCGACGATTTCCAGCGGCTTCTTGGCCTCGAAGGCTACGGCAGCACGTGACTTGATCATCCTG ACTCTCCAGCGAATAAAAACGAGGCACAGAGTGTAAAACAGCGCAATGCGATGAATAATCCAGGCAAAAGCAAAACATTATTGCTGTATGGGGACAATCA
DNA Sequence for Gene
>PFLCHA0_c12200
ATGAATGACAACCGTTGGGAAGGTATCGACGAATTTGTCGCGGTCGCCGAATGCAGCCAGTTCACCGCTGCCGCCGAGCGCCTGGGGGTCTCTTCGTCCC ATATCAGCCGTCAGGTGGCACGGCTTGAGGAGCGCTTGCAGACTCGCCTGCTGTATCGCAGTACCCGCCGGGTGACCCTGACCGAGGCCGGGCAGACCTT TCTCCAGCATTGCCAACGTCTGCAGGATGGTCGCGAGGAGGCCCTGCGGGCCGTAGGCGACCTGACCAGCGAGCCCAAGGGAATGCTGCGCATGACCTGT GCAGTGGCCTACGGCGAGCGCTTTATCGTGCCCCTGGTTACCCGGTTCATGAGCCTTTATCCGCAGTTGCGGGTGGATATAGAGCTCAGCAACCGCCCCC TGGATCTGGTGCATGAAGGGCTGGACCTGGCGATTCGCCTTGGGCGCCTGCAGGACTCGCGCCTGGTCGCCACTCGCCTGGCCCCACGCCGCATGTACCT ATGCGCCTCGCCCTCCTACCTGGAACGTTATGGACGCCCACACAGCCTGTCGGAGTTGAGCCGGCACAACTGCCTGATCGGCAGCTCGGATATCTGGCAA TTAGAACTGGATGGGCGCGAATTTTCGCAACGGGTGCAGGGTAATTGGCGCTGCAACAGCGGGCAGGCGGTGCTGGATGCGGCCTTGCAAGGGGTAGGGC TGTGCCAGTTGCCGGACTACTACGTCCTGGAGCACCTGCAGAACGGTACGCTGATTTCCTTGCTGGAAGCTCACCAACCGCCCAACACCGCAGTCTGGGC GCTGTACCCGCAGCAACGGCACCTGTCACCGAAAGTGCGCAAGCTGGTGGATTATCTGAAACAAGGGCTGGCGCAGCGCCCGGAGTACCGCGACCTGTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CTGCTGCCGCAGGCTGTGACAAGGCCCGCAGGGCCTTCAGGGCCTCAAGAGCGGCGCCTCCTTCCGAGTCGTTCGCAGCCTGCACCAGCGGATACAAGGT GCAGCGCAAGCCAGCAGTCAGCGGCGGTTGGACCAGCGCTGGCGCAACCATTCCAGGTCTTCGGGACGGGTGACCTTGAGGTTATCCGAGCGGCCTTCGA TCAGGCGCGGCGCCTGGCCGGCCCATTCCATCGCCGAAGCTTCATCGGTAATCGCCACATCGGCCACCAGGCTGTCGGCCAGGGCCCGATGCAGGGCACC GAGGCGGAACATCTGCGGTGTGTAGGCTTGCCAGATCAAACTGCGGTCAACGGTTTCCAGCACTCGACCGTGCTTGTCCACACGTTTCAGGGTGTCCCGG GCCGGAACTGCGAGCAGCCCCCCCACCGGGTCATCCATCAACTCACCCAGCAGTTTGTCCAGGTCATCCCGGGAAAGATTGGGCCGGGCGGCATCGTGAA
Amino Acid Sequence
>HTH-type transcriptional regulator HI
MNDNRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTC AVAYGERFIVPLVTRFMSLYPQLRVDIELSNRPLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLSELSRHNCLIGSSDIWQ LELDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLQNGTLISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKQGLAQRPEYRDL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site