Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CGGCTGACCCTTGTAGGAAAAACGCGTGGTGCCATCAGGCATCAGGCCCTTGCCCTGGGTGGCGCGAATGGCCTGACAGAGGTTGGTCTTGCCCGACAGG CAGAATTTGCACTTGCCGCATTCCGGGGTGTACAGCGGGATCACATGGTCACCCACAGCCACCGAGGTCACGCCCTCGCCCACCGCCTCAACCACCGCAC CGCCTTCATGACCGAGGATCGCCGGGAAGATGCCTTCAGGGTCGGCACCAGACAGCGTGTAGGCGTCGGTGTGGCAGACGCCGGAGGCGACGACCCGCAG CAGCACCTCGCCCGCCTTGGGCATGGCGACATCCACTTCGACGATTTCCAGCGGCTTCTTGGCCTCGAAGGCTACGGCAGCACGTGACTTGATCATCCTG ACTCTCCAGCGAATAAAAACGAGGCACAGAGTGTAAAACAGCGCAATGCGATGAATAATCCAGGCAAAAGCAAAACATTATTGCTGTATGGGGACAATCA
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DNA Sequence for Gene |
>PFLCHA0_c12200
ATGAATGACAACCGTTGGGAAGGTATCGACGAATTTGTCGCGGTCGCCGAATGCAGCCAGTTCACCGCTGCCGCCGAGCGCCTGGGGGTCTCTTCGTCCC ATATCAGCCGTCAGGTGGCACGGCTTGAGGAGCGCTTGCAGACTCGCCTGCTGTATCGCAGTACCCGCCGGGTGACCCTGACCGAGGCCGGGCAGACCTT TCTCCAGCATTGCCAACGTCTGCAGGATGGTCGCGAGGAGGCCCTGCGGGCCGTAGGCGACCTGACCAGCGAGCCCAAGGGAATGCTGCGCATGACCTGT GCAGTGGCCTACGGCGAGCGCTTTATCGTGCCCCTGGTTACCCGGTTCATGAGCCTTTATCCGCAGTTGCGGGTGGATATAGAGCTCAGCAACCGCCCCC TGGATCTGGTGCATGAAGGGCTGGACCTGGCGATTCGCCTTGGGCGCCTGCAGGACTCGCGCCTGGTCGCCACTCGCCTGGCCCCACGCCGCATGTACCT ATGCGCCTCGCCCTCCTACCTGGAACGTTATGGACGCCCACACAGCCTGTCGGAGTTGAGCCGGCACAACTGCCTGATCGGCAGCTCGGATATCTGGCAA TTAGAACTGGATGGGCGCGAATTTTCGCAACGGGTGCAGGGTAATTGGCGCTGCAACAGCGGGCAGGCGGTGCTGGATGCGGCCTTGCAAGGGGTAGGGC TGTGCCAGTTGCCGGACTACTACGTCCTGGAGCACCTGCAGAACGGTACGCTGATTTCCTTGCTGGAAGCTCACCAACCGCCCAACACCGCAGTCTGGGC GCTGTACCCGCAGCAACGGCACCTGTCACCGAAAGTGCGCAAGCTGGTGGATTATCTGAAACAAGGGCTGGCGCAGCGCCCGGAGTACCGCGACCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CTGCTGCCGCAGGCTGTGACAAGGCCCGCAGGGCCTTCAGGGCCTCAAGAGCGGCGCCTCCTTCCGAGTCGTTCGCAGCCTGCACCAGCGGATACAAGGT GCAGCGCAAGCCAGCAGTCAGCGGCGGTTGGACCAGCGCTGGCGCAACCATTCCAGGTCTTCGGGACGGGTGACCTTGAGGTTATCCGAGCGGCCTTCGA TCAGGCGCGGCGCCTGGCCGGCCCATTCCATCGCCGAAGCTTCATCGGTAATCGCCACATCGGCCACCAGGCTGTCGGCCAGGGCCCGATGCAGGGCACC GAGGCGGAACATCTGCGGTGTGTAGGCTTGCCAGATCAAACTGCGGTCAACGGTTTCCAGCACTCGACCGTGCTTGTCCACACGTTTCAGGGTGTCCCGG GCCGGAACTGCGAGCAGCCCCCCCACCGGGTCATCCATCAACTCACCCAGCAGTTTGTCCAGGTCATCCCGGGAAAGATTGGGCCGGGCGGCATCGTGAA
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Amino Acid Sequence |
>HTH-type transcriptional regulator HI
MNDNRWEGIDEFVAVAECSQFTAAAERLGVSSSHISRQVARLEERLQTRLLYRSTRRVTLTEAGQTFLQHCQRLQDGREEALRAVGDLTSEPKGMLRMTC AVAYGERFIVPLVTRFMSLYPQLRVDIELSNRPLDLVHEGLDLAIRLGRLQDSRLVATRLAPRRMYLCASPSYLERYGRPHSLSELSRHNCLIGSSDIWQ LELDGREFSQRVQGNWRCNSGQAVLDAALQGVGLCQLPDYYVLEHLQNGTLISLLEAHQPPNTAVWALYPQQRHLSPKVRKLVDYLKQGLAQRPEYRDL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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