Pseudomonas protegens CHA0, PFLCHA0_c07220 (ydgK)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGATCAGCACGCCGTAGTCCTCTCCGGCGGCCAGCGCCGATGGGGTTGCCGCGAACAGGCCCAGGAGGCCGACGAGGCTGAAAGTTGACCAGCGCATGGC TGAATCTCCCGCTGTTATGTCGTAAGACGTGCAGCTTGGCCGAGCGCGCCGCCGATTTCCAGCCCGGCAGATCAATCCGGAACTTGACCTTGCCACGGTG GCAAGGACAAGACTTGCTCCAACCCAATACAGGAGAAGCGCAATGCAAGTATTCAACGTTCAAGGCATGTCCTGCGGTCACTGTGTGCGTGCCATCACCC AGGCGCTGCAAAGCAAGGACCCGGCGGCCACCGTGCGGGTGGATCTGGCGGCCAAGGAAGTCGGAGTCGAGAGCCGCCTGTCCAGCGATGAGGTGATCAG CCTGATCAGCGAGGAAGGCTACGCGGTCAAGGTTGCCTGAGCCTTTTTATATAGTTAGCGACCTATCGGAATGTTCAAGGCGTCCAAGCGCGGCTAGACT
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| DNA Sequence for Gene |
>PFLCHA0_c07220
|ydgK
GTGCGACCGCTGACCAACGCTCGTTTGGATGCCATGAACCTCCGCACAATCCTGATTCTCGGCGCTCTGAGCGCTTTCGGCCCGCTGGCCATCGACTTCT ACTTGCCGGCCTTCCCCTCGATGGCCCTGGCTTTCGGCACCGATGAAAAACACGTTCAGCTGACCCTGGCCGCCTACTTCCTCGGCCTGTCCATCGGCCA GTTGGCCTATGGCCCGGTGGCCGATCGTTTTGGCCGGCGCCTGCCGCTGCTGGCGGGGGTGGGCCTGTTCACGCTGGCCTCCCTGGCCTGCGCCTATGCG CCGAACCTGGAATGGCTGATCGGCGCACGCTTTGTCCAGGCCCTGGGCGGATGCGCCGGGATTGTGATTTCCCGGGCCGTGGTCAGCGACAAGTGCGATG CGGTGGGTTCGGCCAAGGTCTTCTCCCAACTGATGCTGGTGATGGGCCTGGCCCCGATCCTGGCGCCAATGCTGGGCGGCCTGCTGGTCAACCTCTACGG CTGGCAGTCGATCTTCATCATGCTCACGGTGTTCAGTGCACTGTCCGGGCTGGCAGTGGCCCTGGGCCTGCCGGAAAGCATGCCGGCCACCCGCCCGCGC CTGCCTCTGTCCGGGGCGCTGCGCCAATATGGCCTGCTGCTGTCGGACCGGGTATTTCTCGGCCATGCCTTGACCGGCGGGATCGCCATTGCCGGGATGT TTTCCTATATTGCCGGTTCGCCCTTTGTCTTCATCAAGCTCTATGGCGTGCCAGCGGAGCACTTCGGCTGGTTCTTCGGGATCAATGCCGGGGGCTTCAT CCTGGTGGCGCAGATCAATGCGCGCCTGCTGGCCAAGCGTGGCCCGGCGTTCCTGCTGGCGCGCACCGTGTGGATCTACCTGGCAGCGGGCCTGACCCTG CTCGGCGTCAGTGCCTTGCACACCAGTGCGCTCTGGCCGCTGCTGCTGCCGCTGTTCGTGTGTATCGCCAGCCTGGGCTGCATCATTCCCAATGCCGCAG CCTGCGCCATGAATGGTCAGGGCGCACGGGCCGGCAGCGCCTCGGCGATGCTCGGTTGCCTGCAATTCAGCGTGGCTGCAGGGGCGGCGTACCTGGTGGG TGTGCTGCATGACGGCAGCGCCATGCCGATGGCCATGGTCATCAGCCTGTGCGGTGTGCTGGCGGTGAGCATGGCGGTCATGACCCGGCGCTTGCAGAAT GCCCGGGCGCTGAAGGCTGCCGAGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCAGCCGGTGGCGCGCTGGCTCTGGGGAATCGGGTGGGGGGCTTGCAGGCGGCTTTGCAGGGTCTGGGTGAAGGCCCGGGCTTCGGCCTCGCTGCGGAA CGTCACCACATGCTGGTCGAGCCGCACCTGCCATTGAGAGCCCTGGGGGTGTGCCAATTCTTTTATCAGGATCTTCATTGCTGACCTCCTAACGGTAAAA GACTGCGCTGCAAGGGCCCCCAGTGTAGACCCGAATACGGTCACAAATATGACCGGAATCAACTCTCGGACTGACGGCAGCCAGCACCTTTTACCGGTGC CGGCTGCCGTTCGTTAACGCCTCAGAAACCTTCGAGGACGATCTTGCCGCGAGCCTTGCCGCTCTCCAGCAGGGCGTGGGCGCGGCGCAGGTTGGCTGCG TTGATCTGGCCGAAGTGCTCACCCACCGTGGTCTTCAAGGTGCCGGCGTCAATCAGTTCGGCGACCCGGTTGAGCAGCACGTGCTGCTCTTGCATGTCGG
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| Amino Acid Sequence |
>MFS-type transporter YdgK
MRPLTNARLDAMNLRTILILGALSAFGPLAIDFYLPAFPSMALAFGTDEKHVQLTLAAYFLGLSIGQLAYGPVADRFGRRLPLLAGVGLFTLASLACAYA PNLEWLIGARFVQALGGCAGIVISRAVVSDKCDAVGSAKVFSQLMLVMGLAPILAPMLGGLLVNLYGWQSIFIMLTVFSALSGLAVALGLPESMPATRPR LPLSGALRQYGLLLSDRVFLGHALTGGIAIAGMFSYIAGSPFVFIKLYGVPAEHFGWFFGINAGGFILVAQINARLLAKRGPAFLLARTVWIYLAAGLTL LGVSALHTSALWPLLLPLFVCIASLGCIIPNAAACAMNGQGARAGSASAMLGCLQFSVAAGAAYLVGVLHDGSAMPMAMVISLCGVLAVSMAVMTRRLQN ARALKAAEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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