Pseudomonas protegens CHA0, PFLCHA0_c07070
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTATGTCGATGTCGTGCTGTTCCTACGCCAGGACACCAGCAACCCGCAGCAGTCGGCACAGATCGCCGTGCCCGCCATGCGCGTGCTGGCTGTCGGCGAA CAGCTGGGCCTGGCCAATGACGGGCAGCCCGCCTCCCCCGGGTTGAGCAACGAAGAAAAGCTCAAGCAGGACCAGCGCCGGCTGAATGCGCGCACGGTGG TCCTGGCCGTCCCCGAACAGCTCTTGAGCCGGCTGATGCTTGCCACCCAGGTCGGAGTGCTGCGCCTGGCCGTGCGCAGCAGCGAGGAACAGCGCCTGGC CCATTACTGGGCCGGCAACGAAGAAGCCCGCGAGCACCTCGATGCCACCAACAGCAACCTGTTCCAGTTCACTCAACTTGCCCTGGGCAGCGCCCCGCGC GCACCGGCCACCCAAGGTGGCGCCGCACGGTCGGCGGTGGAAGTGATCCGGGGCAACCAAGTCACTCAACAAACTCCCTGATTGAGCAAGGATGCACTAC
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| DNA Sequence for Gene |
>PFLCHA0_c07070
ATGCGCAGTCGTTCCATGCCACTGTTCTCCGCACTGCTGACCCTGAGCCTGGGCCCGCTGCTCTGCACCCAGGCCCTGGCTGCGGCGGTGGCAGGCTGTT CGAACCTGGGACCGCTGCCCGCCGTGCTGGAGATCGGCGAAGGCTTGCAGCAGGAACTGCAATCTCCGGTGGCAATCACCCGCCTGGCGGTGGGCGACCC CAAGATCGCGGACGTCCAGACCACCGGCAACAAAGCCTTCCTGCTCACCGGCATGGCGCCCGGCGCCACCAGCCTGATGGTCTGGACCGCCTGCGCCAGT ACCCCACGCCAGAGCATGGTGTTTGTCCAGGGCCGGGCCACCGCCGACATGAGCACCGGCCGCCTGCCGGCCAGTGACGATCCACTGCTGCCCAGCCAGG TGCAGACCGACATCCGCTTTGTCGAAGTCAGCCGCACCAAGCTCAAGGAGGCCAGCGTTTCGATCTTCGGCCGCGGGCACAACTTCCTGTTCGGCGCGCC CGGCACCGCCCCCGTTACCAGTGGCACCTCCGGCAGCGTGACCCCGACCTTCGGCGGCCGCCGGACCAACATCCCGCTGGACAACGGCACCTTCAACATC GGCTTCGGCAACGGTCGGGTGCTGACCCTGATCAACGCCCTGGAAGGCAGCGGCTTCGCCTACACCCTGGCCCGCCCGTCCCTGGTGGCCCTCAGCGGCC AGAGCGCAAGCTTCCTGGCCGGGGGCGAAATCCCCATCCCGGTGCCCAGCACCGGCAGCAACAGCGTGACCATCGAATACAAGGAGTTCGGTATCCGCCT GACCCTCACGCCCACCATCGTCGATCGCGGGCGTATCTCCCTTAAGGTTGCCCCGGAGGTCAGCGAACTGGACTACAGCAACGCCGTGACCATTGCCGGG ACCCAAGTCCCGGCGCTGACCATCCGCCGCACCGATACCAGCATTTCCCTGGCCGACGGCGAAAGCTTCGTCATCAGCGGCCTGATCAGCACCAACAACA GCTCTCAAGTGAACAAGTTTCCAGGGCTGGGGGACATTCCGGTGCTCGGAGCCTTCTTTCGCGACACCACGATCAATCGCGAAGAGCGTGAACTGCTGAT GGTAGTGACCCCGCACCTGGTCCAGCCCCTGGCCGCCGACGCCAAGCTGCCGGCCCTGCCCGGCGAACGGCTGCGCAACTACGACCCGAACTTCTACCGC ATGTTCTTCCTCGAGAACGGCAACTTCGACAAGCGCAGCGGGTTGTCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCAGGACCTGAGCCAGACGTTTCTCGCCATCACCCGCAACAGCACCGACCTGGAGTGGCTGCAAGGCGCCCTGGCGCCCCTGGGCCAGGTCGTGGGTGC CGACGGCAGTCTCGACGAGCTGCTGGCACTGGTGGATGTGACCTTCGCCAACCTGGTGTTCGTCGGCCTCGATCGCGAACACGTGGTGGCCCAGGCCGCC CTGATCGAAGGCGCCCTGGAAGCCAAGCCGATGCTGGCGATCGTCGCCCTCGGTGATGGCATGGACAACCAGTTGGTGCTCAATGCCATGCGCGCCGGCG CCCGCGACTTCGTCGCCTACGGCTCGCGCTCCAGTGAAGTCGCCGGGCTGGTCCGCCGTCTGAGCAAACGCCTGCCGGCAGTGACACCCAACACGCAACT GGGCGGCCTGACCGTGCTCTATGGCGCCCAGGGCGATGGCGACGGCGCCCTCCTGGCCAGCCACCTGGCGCTGGTGGTGCAGAAGAGTGGCCAGCAGACT
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| Amino Acid Sequence |
>uncharacterized protein y4xJ
MRSRSMPLFSALLTLSLGPLLCTQALAAAVAGCSNLGPLPAVLEIGEGLQQELQSPVAITRLAVGDPKIADVQTTGNKAFLLTGMAPGATSLMVWTACAS TPRQSMVFVQGRATADMSTGRLPASDDPLLPSQVQTDIRFVEVSRTKLKEASVSIFGRGHNFLFGAPGTAPVTSGTSGSVTPTFGGRRTNIPLDNGTFNI GFGNGRVLTLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSTGSNSVTIEYKEFGIRLTLTPTIVDRGRISLKVAPEVSELDYSNAVTIAG TQVPALTIRRTDTSISLADGESFVISGLISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLMVVTPHLVQPLAADAKLPALPGERLRNYDPNFYR MFFLENGNFDKRSGLSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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