Pseudomonas protegens CHA0, PFLCHA0_c07020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas protegens CHA0, complete genome. [Details]
DNA Sequence Upstream of Gene
GCGCTGGCCTACGCCGCCAAGCGCCGGCAGAAGCACATCGCCCTGGAGATCTCGACCTTCATTCCCCTGCTGCGCATCCTGTTCGAGTCGGGCATGGCAG TGGAACAGGCGTTGCGCGTACTGAGCAGCGAAGCGCAAAAGCTGCTGCCGGAACTGACCCACGAACTGCGCCTGATCCTGGCCCGTGTCGACTCGGGGCT GGAGCTGGGCCATGAACTCAACCAGACCGCCACCCTGCTGGCGGTGGACGAGTTGACCGACACCTGCGTGATTCTCCAGCAACTGATCCTGCAGGGCGGC GGGGCAATGAAATCGCTGCAGGCGCTCAAGCAACTGCTGGACGACCGGCGCCTGACCCGCCTGCAGGAATACATCTCGAAAATGTCCGCAAAAATGTCGG TGGTGATGATGCTGTTTCTCTTCCCCGCCCTGTTGATCGTGCTGGCCGGGCCAGGCTTCACCGCCATCGCCCGGGCCTTCGCTTCCTAAGAGGGAACCTG
DNA Sequence for Gene
>PFLCHA0_c07020
ATGAAAACCATGATTGTCGTTGCCAGCCTGTTGCTGCTCGGAGGGTGCGCCAGCAACGGCCAGACGCCCTGGGCGGCCCTGACCAACTCCAGCAGTTGCG CCAAGCTCAGCTCCGAGCAGGAACTGGCAGTGAACCTCGCCGACGAAATGGCCACCGATGGCAAGCTGCACGCCAGCCTGGCCAACCTGCAGAACCTGCC GGACAACCTCGCCGAGGTGCGCGTACGCAAGGCGCGAGTCTATCGGTTGCTGGGCCGCAGTGAGGCCGAACCCTTGTACCGCAGCCTGCTGGGCTCGTGC CTGGCCGCCGAAGGCGAGCACGGCCTGGGGCAGTTGGCGGCGGCCAGGGGCGACAACGGCCAGGCCCAGGCGCACCTGCAACGGGCCGCGCGCCTGGCGC CGACCAATGAAAGAATCCGCAATGACCTGGGGGTGGTCTACCTCAACCAGTTGCGCATCGAGGATGCGCGCTTCGAGTTCCTCACCGCCATTGAGCTCAA GCAGTCCGAGCCCCTGGCGGCCATCAACCTGGTGACCCTGTTGCTCTACCAGGACAACTGGCAGCAGGCCGCGCAAGTGGTCAGCCAGGCGAGCCTGAAC CCGCAGCAGTTCGCCCAGGCCCAGGCCCGCGCCGAAGAGCTCAAGGCCCCGACCGCCCCGCGCGCCAAGGTGACCCAGGTCGCCAGTGGCGCTACCACCT TGCAGCCAGACGCCGCACCCGCCAAGGAGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGATGAAACTGCCGATGTTCTATTGCACTGCCCTGCTGGCGCTGCCCCTGGCCGCCCAGGCCATCGAGGCCGGCCCTGCTTCGCCCCAGCAACAGGAAAC CGAAGCCTGGCTACTGTTGCAGAACCGCAACCTGGCGTCCTCGCCCCAGCCTCAGACGGCCACGCCCACCGAACGCGAGCTGGCGCTGCAGCGCTGGCTG AAGAAATACAAATACGAGATCCCGGACCTGTACGACCCGGACGCCGGCGGCAAGGTGGAAACCAAGTAGGAGAAAGCCCGCAACCGGCGGCGAACGGCTC GCCGCCGCAGGCTCAGTGGGCAGTCACCCGCTGGCGCAGCCCGGAATTGCTCGGCGACAGGGCCAGGGCCAGCTGTGTGCGGTTATGCATGTGGGTCAGG CGCAGTACCTGGGAGACATACAGCTTGACGGTGTTTTCGGTGATCCCCAGCTCGCAGGCAATCTGGTAGTTGGTCTGGCCCTTGCCCACCAGTCGGGCCA
Amino Acid Sequence
>TPR repeat-containing protein
MKTMIVVASLLLLGGCASNGQTPWAALTNSSSCAKLSSEQELAVNLADEMATDGKLHASLANLQNLPDNLAEVRVRKARVYRLLGRSEAEPLYRSLLGSC LAAEGEHGLGQLAAARGDNGQAQAHLQRAARLAPTNERIRNDLGVVYLNQLRIEDARFEFLTAIELKQSEPLAAINLVTLLLYQDNWQQAAQVVSQASLN PQQFAQAQARAEELKAPTAPRAKVTQVASGATTLQPDAAPAKER
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site