Pseudomonas protegens CHA0, PFLCHA0_c06280 (hpmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCCCAGGGTTTTGCCGCCACCGCCCAGCAGAACAAGATGACCACCTGCAATGCCGAGGCCACCGCCAAGACCCTAAAGGGCGATGAGCGCAAAGCCT TCATGAGCACTTGCCTCAAGGCGGCCCCGGCAGCTGCGGCTACCCCGTCCACGCCTCAGGAAAGAATGAAGACCTGCAACGCCACGGCCACCACCCAGGC GCTCAAGGGCGATGCGCGCAAGGCGTTCATGAGTGATTGCCTGAAGAAGAAATGAGCCTGAATCGATGGGGCCGAGGTATCGCGCGCGCTACAGGACCTT GGCCTGCATCGGTTTTTCAGAGTTTCGCAGCACGTAAACCATTAGCTTTCAATGAGATAGGTCTGGCAGCTACCGCTCGTCGCTTTTTTGTTATGTAAAT TTTTTTACATTTACACTTTGTTCCCTTCGAAAACAGGTGCCGGGACGCACCACGCGGACGTTTGGCCAGCCAAAATCCGTGATTCTAGGGAATGGAAAGC
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| DNA Sequence for Gene |
>PFLCHA0_c06280
|hpmB
ATGTCGCGTTTTGGCTTGTTCAGGCCTGTAGTAGCGTTTTGTGCTTTGTCTGCTTCGCTCGCGCTCAGCGCCGCGCCGCTGCAGACGCCGGGTGATCGCG ACCTGATTCGGGATCGCCAGCAGCAGTTGCTGCAAGAGCAGCAGAAGCGCCTCGACGAACTCCAGCAACTCCCCGGCAAGACCTTGCCCCCCGAGCCTGC CCCGCAACCGGGCGAGCAGCGCTGCTTCACCATCAAGACCGTGATTCTCAAGGGTGCCGATCATCTTTCCGCCGCCGATCGCGAGCGCCTGGTGGCGCCC TATCGCGACCAGTGCCTGTCGGTGACGCAGATCAACACCCTGCTCAAGGCCATCACCCATCACTACCTGCAGCAGGGCTATGTCACCACCCGGGCCTACC TGCCGGCCCAGGAACTGGCCTCGGGGCAACTGACCATCGTGGTGGTCGAAGGCCGCCTGGAGAGCCTGGACAGTTCCGCCCTGGCCAGCTCGCGGGAACT GGCCATGGCCTTTCCCGGCACCACCGGCGAGGTGCTCAACCTGCGGGAGCTGGAGCAACTGGTGGACCAGCTGACTCGCTTGCCTTCGCGCCAGGTGGAA CTGGAACTGGCCCCGGGAGAGAAACTGGGCGACAGCCGTGTCGGGCTCAAGGGCCAGCGTCTGAAGCCCTGGCGGGTATCGGCCACCCGCAACAACAGCG GCGACAAGAGCACCGGCGAGCAGCAGGCCGGCCTCGGCCTGGACTGGGACAGCCCCCTGGGCCTGGCAGACCAGCTCAGCCTGCGGGCCAATCAGGACAC GGTCAGTGACCGCTGGCGCCACTCCGACAACCAGAGCCTGTTCTACAGCCTGCCCTGGGGCTGGTGGACCCTCAGTTATTCCTACAGCCAGAGCTACTAC CGCACCCGCAATGACAGCACCGGCTTCGACTTCACCATGGACGGCGAAAGCAAGAACCAGCAGTTGCGCGCCGAACGGGTGCTGCACCGCGACAACCTGA GCAAGACCGGCATGAGCCTGGGCCTGAGCCAGTTGCGCACGCGCAACTACATCGATGACAACCTGATCGAGGTGTCCAGCAACCGCATCACCGAAAGCCA GCTGGGCTTCAACCATGGGCGGCGCATCGGCAATGCCCTGGTCAACGCCGACATTGGCTGGCAGCAGGGCATCGGCGCCCTGGATGCCCAGGCCAGCGGC AATCCCCATGGCAGCGAGCCGGTCGCCCGTTACAACAAATACAGCCTGACCCTGAGCTACCTGCAGCCCTTTCGCCTGTGGAACGAAAACTTCAGCTTCG ACAGCCTGGCCACCGGGCAGCGCAGCGAGGACGTGCTCTTCAGCCCCCAGCGCATCAGCCTCGGCGGCCTCAACTCGGTGCGTGGCTTCCAGGACCAGAC CCTGTCCGGCAACAGCGGCGGCTACTGGCGCAACCAACTGCGCTGGCGCCGTGCGGTGACCTGGCCGGCGTTGCAGCCTTTTGTCCAGGAATACGGCATG GCCTTTGCGTATGACGTGGGGGTGATCAAGGGCGATCGCTACAACCACGATGCCCGCGGCCGCATGAGCGGCAATGCCCTGGAACTCAATGCCCGCGGCC AGTACCTGGCTGCATCCGTCAGCTTCGCACGCTCCCTGGAGCGACCGGCAATTATCGAGAGGCGAGAGCACCCGGTGTACTTCCGGGTAGACCTGTTCTT CTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGCCCGCAACGTTATTGAATGGATGATTCGCACATGGACGTACGCAAGCCTTTTGCCCAATGCATTGCCCTGTCGTTGTCGGGGATCCTGTTTCTCAA CCCGATCGTCAGCGTGGCCGCAGGCCTGGCCCTGGACCCGGCCGCGGGGGGCAACGCCACCATCGGCGCGGCCGGCAATGGCGTACCCATCGTCAACATC AACGCCGCCAACGGCGCCGGCTTGTCCCACAACAAGTTCAGCGAATACAACGTCGGCAGCAACGGCCTGATCCTCAATAACGGTACCGGCTCGACCCAGA ACACTCAGCTGGGCGGCTACATCATGGGCAACCCCAACCTCAAGGGGCAGGCGGCCCAGGTCATTCTCAACGAAGTCACCGGCAGCAATCGCAGCAAGCT GGCGGGCTATACCGAAGTGGCCGGGCAGTCGGCCCGGGTGATCGTCGCCAACCCTCATGGCATCACCTGCAACGGCTGCGGCTTCATCAACACCCCACGG
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| Amino Acid Sequence |
>hemolysin transporter protein HpmB
MSRFGLFRPVVAFCALSASLALSAAPLQTPGDRDLIRDRQQQLLQEQQKRLDELQQLPGKTLPPEPAPQPGEQRCFTIKTVILKGADHLSAADRERLVAP YRDQCLSVTQINTLLKAITHHYLQQGYVTTRAYLPAQELASGQLTIVVVEGRLESLDSSALASSRELAMAFPGTTGEVLNLRELEQLVDQLTRLPSRQVE LELAPGEKLGDSRVGLKGQRLKPWRVSATRNNSGDKSTGEQQAGLGLDWDSPLGLADQLSLRANQDTVSDRWRHSDNQSLFYSLPWGWWTLSYSYSQSYY RTRNDSTGFDFTMDGESKNQQLRAERVLHRDNLSKTGMSLGLSQLRTRNYIDDNLIEVSSNRITESQLGFNHGRRIGNALVNADIGWQQGIGALDAQASG NPHGSEPVARYNKYSLTLSYLQPFRLWNENFSFDSLATGQRSEDVLFSPQRISLGGLNSVRGFQDQTLSGNSGGYWRNQLRWRRAVTWPALQPFVQEYGM AFAYDVGVIKGDRYNHDARGRMSGNALELNARGQYLAASVSFARSLERPAIIERREHPVYFRVDLFF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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