Pseudomonas protegens CHA0, PFLCHA0_c05240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas protegens CHA0, complete genome. [Details]
DNA Sequence Upstream of Gene
GCCAATCCGGCAGACCAGCATTCGTTCATCGTCACCGAGGAGCTGGCGCCGACCGTCAGCCTCGAAGATTTCAGCATCGGCTGGGTCAAGCAGCCGCCGG CGCCTGCGCTCAAGCGCGCGCTGATCGCCGAGGTAGCGCGCATGACCGGCATGATGCATCGCGCCGGGGTCAACCACCGCGACTGCTATATCTGCCACTT CCTGCTGCACACCGATCGGCCTGTCACTCCCGAAGGGCTCAAGCTCTCGGTGATCGACCTGCACCGGGCCCAGACCCGGCCGAAGATCACTCAGCGCTGG CGCAACAAGGATCTGGCGGCGCTGTATTTCTCGGCCCTGGATATCGGCCTGACGCGCCGCGACAAGCTGCGCTTTCTCAAGGGCTACTTCCAGCAGCCGT TGCGGCAGATTCTGGCCGAGGAGGCCGCACTGCTGGCCTGGCTCGAAGGCAAGGCGGAAAAGCTCTACGCCCGCAAGCAACGGTACGGAGATGCACTCTG
DNA Sequence for Gene
>PFLCHA0_c05240
ATGGCGAGCTGGAACCTGGACCCGGCCTATCAGGCGTTGGCGGAGGATTTCGGCAGTCTGGAAGCGGTGTTTGCCCTGCAGGGCGAGCACCTGACCCGGG ATCCGTTGTCCGAAGTCATCCGCGTCGAGCGTGGTGGCGTCAACTATTACGTCAAGCGCTATACCGGCGCCGGCAAGAATCTGCGGCGCTACCTGGGCAA GCCCCGGGTCAAGTTCGAGTGGCAGAACCTCAAGCGCTTCGCCAAATGGGGCATTCCCACCGCCGATGTGGTGGCCTGGGGCCTGGAGCGTCGCTGCCTG GCCTATTCCCGGGGGGCGATGATCACCCGGGAGCTGCCGCGTACCGAGGATCTCTCGGTGCTGGCCGAACGCAACGACCCGCGTCTGCAGGACCGTCGTT GGGTGGATGGCGTCAGCCGTCAGTTGGCCGCTTACACCCGGGTCATGCATGACCACCGCTTTACCCACAATGATTTGAAGTGGCGCAACCTGCTGGTCGA CGACCAGGACCGGTTGTACCTGATCGATTGCCCGAACGGCGATTTCTGGCGTGGTTTCTGGCTCAAGTACCGGATCACCAAGGACCTGGCCTGTCTGGAT AAGGTGGCCAAATACCATCTGTCGGCCACCCAGCGCCTGCGTTTCTACCTGCAATACCGTCAGCGTGATCACTTGAGTGCCGCCGACAAGGAGCGTATTC GCCACGTGTTGAGATTTTTCGAGGGGCGTGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CTGATTTTCTGGCGTCCGAGGAGCGTGCGCTGCTGGAGCGCAATGGCCTCGGCACTTTCGACCAGCTGTGGGCCACCCAATTGGACGCGGTGGATGAACC CAATACCGGTCGTGGCGGCAGCAGCAGTGTGTTTCGCCTGGATGTGGAAGGGCAGGGGTTCTACCTCAAGCGCCAGACCAACTACCTGACCCGGACCCTG CACCGGCCCTTTGGCGAGCCGAGTTTCGCCCGTGAATTTCGCAATATCCGCCGCTACCAGCAGTTGGGCATTCCGGCCTTGCAAGCGGTGTTCTTCGGTA TGCGCAAGGTCGATGGCGAGTCCCGGGCGATCCTGTTGACCCGGGCCCTGGATGGCTGGGATGACCTGGATGCGCTGCTGTTGCAGTGGGACCGGCTCAG CGAGCATCAGCGGCAGGCGGTGCTCCAGGCTTGCGGGCAACTGGCCCGGCAGCTGCACGGCTTGCGCCAGGTGCATGGCTGTTTCTATCCCAAGCATATT
Amino Acid Sequence
>putative lipopolysaccharide core biosynthesis protein
MASWNLDPAYQALAEDFGSLEAVFALQGEHLTRDPLSEVIRVERGGVNYYVKRYTGAGKNLRRYLGKPRVKFEWQNLKRFAKWGIPTADVVAWGLERRCL AYSRGAMITRELPRTEDLSVLAERNDPRLQDRRWVDGVSRQLAAYTRVMHDHRFTHNDLKWRNLLVDDQDRLYLIDCPNGDFWRGFWLKYRITKDLACLD KVAKYHLSATQRLRFYLQYRQRDHLSAADKERIRHVLRFFEGRE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site