Pseudomonas protegens CHA0, PFLCHA0_c04530 (pilN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCGACTCCTGGCGCCGTGGCGTTGCTGGATATAGGCCCGGCCCTCAGCCGTTTCAGCGTCCTGCACGGCCAGCGAGTGATCTATAACCGTGAGCAGC TTTTCGGTAGCGGGCTGCTGATGGAAGCGCTCCAGCGTCGATACGGGCTGACACTGGAGCAGGCATTGCTGGCGCAGAGCCAGGACCGTTTGCCACAGGG TTGCGCCGAAGAGTTGCTGCAACCCTTCGAGCAGGAGGTGCTGCAACAGGTCAGCCGTTCCCTGCAGCAGTTCGCCACCTCGCCTCAGCAACAGCCCCTG GTGCAACTGCTGCTGGCCGGAGACGGTAGCGGGCTGGCCGGCCTGGAGCGGCGGGTGGAGGGCGAGACAGGCATCGATACGTCGCTGGCCAATCCTTTCC GGGCCATGCCGATGGGGCCTCGAGTCGACCCCCAGGTATTGAATGAACAGGCGCCGAACCTGCTCCTGGCCTGTGGCTTGGCCCTGCGAGGGTTCGACTG
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| DNA Sequence for Gene |
>PFLCHA0_c04530
|pilN
ATGGCGCGGATCAACCTGTTGCCCTGGCGCGAGGCCTCGCGCGAACTGAGGCGTCGGCGTTTCCTGCAGATGCTGGCGATGATGGTCGTGCTCGGGGGCG GGGTCATTCTGTTGGCCGACGCCTATATAAGCCGAGTGATCGAGCGCCAGCATTTGCGCAACCAGTATCTGGGCCAGGCGACGGCACGCCTGGATGAGCA GATCGCCAGCATCCAGGGGCTCAAGGCGCAACGACAGCAGTTGCTCGAACGCATGGGCATCATCGAAGAGCTGCAGGGCAACCGCTCCAACAGTGTGCGG ATTTTTCAGCAGTTGGCCCGCAGCCTGCCTGATGGCGTGTACTTCACCGAGGTGGATCTGCAGGGGCAGAACCTTGGAATCAGCGGTGCCGCCGAGTCAA ACAACAGGGTGTCCGACCTGATGCGCAATCTGCAGGCTGCCGAGGGTTTTGCTGCCCCCAGCCTGACCGAGGTGAAGAACGCGGTGGACGCCCAGCAAGG GCTGAACAACCTGTTCCGGCTGAATGTCGGGCAGACGCCCGGGCCAACCGGGGAGCTTCGGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCTCGACAATGGCTGGCAGAGTTGCGGCGTATCGATCTGCGGGAGCTGGAGCTGGCCAACCTGGGCTCCTGGCCCGGGCCGGCCAGGAGTCTGGTGGC GGCCCTGCTTCTGCTGCTGGTTCTGCTAGTGGGCTACGGCTTTTACCTGAGCCCGCACCTGGAGCAACTGGAGCGCCAGCGCCAGGAGGAAGCTCGTCTC AGGCAGGAGTTTGCCGGCAAGGCGCGCCAGGGAGCCAATTTGCCGCGCTACCAGGAGCAGTTGGCCGTCATACGCAACAGCTTCGACCTGCTGTTGCGTC AGTTGCCCAGCGACACCGAGGTCCCCGGCCTGCTGGAGGACATCAGTCGCGTGGGGCTGGGCAGTGGCCTGGCCTTCGAGGAAATCAGGCTGCAACCGGA GGTGGCCAGGCAGTTCTACGTCGAGTTGCCGATCCAGATTACTGTCACCGGGGCCTATCACGACCTGGCGAGCTTCGTCAGTGGCGTCGCCGGCCTGCCG
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| Amino Acid Sequence |
>type IV pilus biogenesis protein PilN
MARINLLPWREASRELRRRRFLQMLAMMVVLGGGVILLADAYISRVIERQHLRNQYLGQATARLDEQIASIQGLKAQRQQLLERMGIIEELQGNRSNSVR IFQQLARSLPDGVYFTEVDLQGQNLGISGAAESNNRVSDLMRNLQAAEGFAAPSLTEVKNAVDAQQGLNNLFRLNVGQTPGPTGELRQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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