Pseudomonas protegens CHA0, PFLCHA0_c03080 (rfbD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCCCAAGGTCTTTGGCGACGAGCGTGGCTTCTTCTACGAGAGCTTCAATGCCAAGGCCTTTGAAGAGGCCACCGGCTTGCAGAAGAGCTTTGTACAGG ACAATCACTCGCGATCCGTCAAGAACGTCCTGCGTGGTCTGCACTACCAGATTGAGCACCCGCAGGGAAAACTGGTCCGGGTGATTGCCGGCGAGGTTCT GGACGTAGCCGTCGATATCCGGCGCAGCTCCCCGAACTTTGGCCGTTGGGCAAGTGTTCGCCTGTCTGCACATAACAATCGCCAACTATGGATTCCCGAA GGGTTCGCCCATGGCTTCGTAGTACTCAGCGACGCTGCCGAGTTTCTCTACAAGACCACCGATTACTACACGCCTTCTGCTGAACGTTGCATCAGCTGGG ACGATCCGACCCTGGCGATCAACTGGCAGTTGCAGGATATGCCAACGCTCTCGGCCAAGGACCAGAAAGGTAAAAGCCTAGAAGAGGCCGATCTGTTCCC
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| DNA Sequence for Gene |
>PFLCHA0_c03080
|rfbD
ATGAACGCTCCTCTGAAAATCCTTATCAGCGGCCAGCACGGCCAGGTCTCCCGGGAGCTGCAGCAGCGCCTCGGCGACCTCGGTGAGCTGGTGGTCCTGG GTCGTGAGCAACTGGACCTGAGCCACCCGGAACAGATCCGCCAGCAAGTGCGCGCCATTCGCCCGGACCTGATCATCAATGCCGCCGCCCACACCGCCGT CGACCAGGCCCAGAGCGAGCCGGAGCTGGCTTTTGCGATCAACGCCACGGCCCCCGGGATCTTCGCCCAGGAAGCCTTCGAGCTGGGTGTGCCGCTGATT CACTACTCCACCGACTACGTGTTCGATGGCAGCAAGGAAACGCCCTATGTGGAGGACGACGAGCCCAACCCGCTGAGTGTCTACGGCGAGAGCAAGCTGG CCGGCGAACGGGCGATCCGGCTGGTCCAGGGCCAGCATTTGATCCTGCGCACCAGTTGGGTCTACTCCAGCCATGGCAAGAACTTCCTGCTGACCATGCA GCGCCTGCTGCAGGAAAAACCCGAGCTGCGGGTGGTGGCCGACCAGATCGGCGCGCCCACCTGGGCCGGCACCATCGCCACCAGCACCCGGGCGCTGATC GAGCGTTGGCGAGCCGGGCAGCCCGGCGCCTGGGGCACCTACCACCTCACCGCCCACGGCGAGACTTCCTGGTTCGGCTTTGCCCAGGCCATCGGCGAGC AGTTGCTGGCCATGGACAAACCCTGCGCCGTCCTTGAAGCCATCCCTTCCAGCGCTTACCCGACACCGGCGCCGCGGCCGTTGAACTCGCGCCTGGACTG CAGCCGCCTGGCACGGGAGTGGGGCGTGGTCCAGCCGGACTGGCACACCGCATTGCGCGAGTGTCTTGCCGAGCAGGGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATAATGCGCCTGTATCCACAGGCGCCTTTTCCATGACCCCACCCCTTCCCCGTCGCCCTCGCTGGCGCAGCCTGGCCTTGCTGGCACTGTGCCTGGCG CCGTTGCTGTGGCCGCTGGAGCATCTGGCGGAGCGCTACTACCGCAACGAGCTGACCAGCCAGAACCGCCAGACCCTCGACCTGTACGTGGCCAACCTGC TGGGCACCCTGCACCGCTACGAAGTGCTGCCGCAGATCCTCGGCGACTTGCCGGCACTGCGCGCGGTACTCGGCGCCCCGGACGATGGCGTGACCCAGGG CAACGCCAACCGCCTGCTGAAGAACATCAGTGCCCAGACCGGCGCCGAGGTGATGTACCTGATGGACACCAGCGGCAAGACCCTGGCGGCCTCCAACTGG GACAAGCACGACAGCTTCGTCGGTCGCAATTTCGCCTTCCGCCCCTATTTCAGCGAGGCCATGGCCGGGCGCCTGGGGCGCTTCTTCGGCCTGGGCACCA
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| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase RfbD
MNAPLKILISGQHGQVSRELQQRLGDLGELVVLGREQLDLSHPEQIRQQVRAIRPDLIINAAAHTAVDQAQSEPELAFAINATAPGIFAQEAFELGVPLI HYSTDYVFDGSKETPYVEDDEPNPLSVYGESKLAGERAIRLVQGQHLILRTSWVYSSHGKNFLLTMQRLLQEKPELRVVADQIGAPTWAGTIATSTRALI ERWRAGQPGAWGTYHLTAHGETSWFGFAQAIGEQLLAMDKPCAVLEAIPSSAYPTPAPRPLNSRLDCSRLAREWGVVQPDWHTALRECLAEQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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