Pseudomonas protegens CHA0, PFLCHA0_c01880 (gabT1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCCAAGGATGCAGCCGTGGCCAAGGAAGAAACCTTTGGCCCACTGGCGCCGCTGTTCCGCTTCAAAGACGAAGCCGAAGTCATCGCCATGTCCAACGA CACCGAATTCGGCCTGGCCTCGTACTTCTATGCCCGCGACCTGGGCCGTGTGTTCCGTGTGGCCGAGGCCCTGGAATACGGCATGGTCGGGGTCAACACC GGCCTGATCTCCAACGAAGTGGCGCCGTTCGGCGGCATCAAGGCCTCGGGCCTGGGCCGTGAAGGTTCCAAGTACGGGATCGAGGATTACCTGGAAATCA AATACCTCTGCCTGGGTATCTGATCCGGTTTCAAGCGCCGGGGGCACGAGAGCGCTGTCCCCCTGCGCAGCTTTAAAAAACGCACTTTTCAAGGTGGCCC GGGACCGCTCCGACAGTCGATCATCGCATGCTGTCGCAGGCGCTTCCCCGCCCCGCAACCCTTGAATCACACCGCTGCCGCAGCGGTGAATGAGGACACT
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| DNA Sequence for Gene |
>PFLCHA0_c01880
|gabT1
ATGAGCAAGACCAACGCATCTTTGATGAAACGCCGTGAAGCCGCTGTACCGCGCGGTGTTGGCCAGATTCACCCGATCTTCGCCGACAGCGCGAAGAACG CCACCGTCACCGACGTTGAAGGCCGCGAGTTCATCGACTTCGCCGGCGGTATCGCGGTACTGAACACCGGTCACGTGCACCCGAAGATCATCGCCGCGGT GACCGAGCAACTGAACAAGCTGACCCACACCTGCTTCCAGGTCCTGGCCTACGAGCCTTACGTGGAGCTGTGCGAGAAAATCAACGCCAAGGTGCCAGGT GATTTCGCCAAGAAAACCCTGCTGGTGACCACCGGTTCCGAAGCCGTAGAGAACGCCGTGAAGATCGCCCGTGCCGCCACTGGCCGCGCCGGCGTGATCG CCTTCACCGGCGCCTACCACGGCCGCACCATGATGACCCTGGGCCTGACCGGCAAGGTCGTGCCTTACTCGGCCGGCATGGGCCTGATGCCAGGCGGCAT CTTCCGCGCGCTGTACCCGAATGAACTGCACGGCGTGAGCATCGACGACTCCATCGCCAGCATCGAGCGCATCTTCAAGAACGACGCCGAGCCTCGTGAT ATCGCCGCGATCATCATCGAGCCGGTGCAGGGCGAAGGCGGCTTCTACGTCGCGCCCAAAGAGTTCATGAAGCGCCTGCGCGCCCTGTGCGACCAGCACG GCATCCTGCTGATCGCTGACGAAGTGCAGACCGGCGCTGGCCGTACCGGCACCTTCTTCGCCATGGAACAGATGGGCGTTACCGCCGACCTGACCACCTT CGCCAAGTCCATCGCCGGCGGCTTCCCGCTGGCCGGTGTCTGCGGCAAGGCCGAGTACATGGACGCCATCGCTCCAGGCGGCCTGGGCGGCACCTACGCC GGTAGCCCGATCGCCTGTGCGGCGGCCCTGGCGGTGATGGAAGTGTTCGAGGAAGAGCACCTGCTGGATCGCTGCAAGGCTGTTGGCGAGCGCCTGGTGA CCGGCCTCAAGGCCATCCAGGCCAAGTACCCGGTGATCGGTGAAGTGCGTGCCCTGGGCGCGATGATCGCGGTGGAGCTGTTCGAAAACGGCGACAGCCA CAAGCCGAACGCCGCTGCCGTGGCCCAGGTCGTGGCCAAGGCTCGCGACAAGGGGCTGATCCTGCTGTCCTGCGGCACCTACGGCAACGTTCTGCGGGTT CTGGTACCGCTGACCTCGCCGGATGCCCAGCTGGACAAAGGCCTGGCCATCATCGAAGAGTGCTTCGCTGAACTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGACGCTGTGACCTGATCGACAGAAAAACCCGCTTCGGCGGGTTTTTTTTCGCCCTCAGGCGGCTCCAGGGGGATTTGCGTTGTATGGAAGCCCGCGCAT TGACTAAGGTGCAAGGGATTGCCTAGGGAGCGTGCTGCATGACCGCTGTTGATTTACCCGCTGTACCTCGCGTGCTGATTGCCGAGGCTGATCCCTGGTC TCGTGATTTGCTCAAGCAAGTGCTGTTGAACGTGCGCTGTGATGCGCGTCTGGACTTGTGTGCCGACGGTCAGGAGGCCATGGACCTGCTGAGCGCCAAA CCCTATGACCTGATCATTGCCGATTGGGAGCTGCCGGGCATCGATGGCCTGTCGCTGCTGCGCGCGGTGCGCCAGCGCAAGCGCAACCCGGTGCAGCCGT TCATCCTGCTGAGCGTGCGCAGCGACAGCGCCAGCGTGCGCGAGGCCTTGCCCCTGGCGCCCACTGCCTACCTGACCAAGCCCCTGAACATGGAAGGGCT
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| Amino Acid Sequence |
>4-aminobutyrate aminotransferase GabT
MSKTNASLMKRREAAVPRGVGQIHPIFADSAKNATVTDVEGREFIDFAGGIAVLNTGHVHPKIIAAVTEQLNKLTHTCFQVLAYEPYVELCEKINAKVPG DFAKKTLLVTTGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALYPNELHGVSIDDSIASIERIFKNDAEPRD IAAIIIEPVQGEGGFYVAPKEFMKRLRALCDQHGILLIADEVQTGAGRTGTFFAMEQMGVTADLTTFAKSIAGGFPLAGVCGKAEYMDAIAPGGLGGTYA GSPIACAAALAVMEVFEEEHLLDRCKAVGERLVTGLKAIQAKYPVIGEVRALGAMIAVELFENGDSHKPNAAAVAQVVAKARDKGLILLSCGTYGNVLRV LVPLTSPDAQLDKGLAIIEECFAEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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