Pseudomonas protegens CHA0, PFLCHA0_c00840
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGTGACGCTGCCAGTGTTGCTTGAGCGGGATTGGCACTTTGGCGTAACCGTAGCCCGGCAGGTCGACCAGACGGCGATCGTCGTCTAGCTTGAAGAAG TTCAACAACTGCGTGCGACCCGGAGTTTTCGAGGTGCGTGCCAGGCTGGCGTGGGTCAGGGTGTTCAGGGCGCTGGATTTGCCGGCGTTGGAACGCCCGG CAAAGGCCACTTCGAAGCCTTCATCGTCAGGGCATTGATCGACTTTGGCGGCGCTGAGCATGAACGTAGCCTGTTGGCACAGACCGAGGATGGGGTTCTT GAGTTGCATGGGATTTCCGATTGGGGCGATGCCGAGAGTGGACGCGGCGAGCGGTGTCATTTCCGTTTCAGTAACGCCAGTATATAATGCCGCAGATTTT GTGTGCGCTTTGTCCCAGCGTAGGATGAAGTTCACGAGAGCGATAAACCTTGAATGCGCATTAGAACGCACCACGCTCTCAACCCTGAAAAGGTCGTTTT
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| DNA Sequence for Gene |
>PFLCHA0_c00840
ATGACGAAATGGCTGCTAGCTGCCGGTGTCTTGATGCCGTTTTACGGCGCTCAGGCTACACAGGATCCGGAAGCTGTGTACAACCGTGTTTGTGGGGCTT GTCATTCCGGCCAACTACCCACGGCGCCCCGCAAGGGCGACCAGGAAGCTTGGGCGCCGAGGTTGGCGCAAGGTATGGAGACGCTGGTGCAACACGTGAC CCAGGGTTTCAAGGCGATGCCGCCGCGTGGTTTGTGCATGGACTGCAGTGCCGAGGATTACCGAGTCATCATCCATTGGATGAGCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCGGTCCATAACTCTTAACCCTTAGCCGTAGTTGGATTAGCTGATGAACAAATTACTCGTGAGTCTGCTGTTGACCTTGGGCATCACAGGTGTCGCCC ATGCCGCAGGCGACGCTGCTGCCGGTCAGGCGAAAGCCGCAGTCTGTGGTGCTTGCCACGGCCCTGATGGGAACAGCATGGCGCCAAACTTTCCCAAGCT GGCGGGTCAGGGGGAAAAGTACCTGAACAAGCAGTTGCACGATATCAAGTCCGGCAAGCGCCAGGTGCTGGAGATGACAGGCCTGTTGACCAACCTGAGC GATCAGGACCTGGCTGACATCGCCGCCTACTTCGCCAGCCAGAAAGGCAGCGTCGGCGCAGCAGATCCTAAAGTCGTGGCCCGTGGTGAAGAACTGTTCC GTGGCGGCAAGCTCGACCAGGGCATGCCTGCCTGCACCGGTTGCCACTCGCCAAACGGTGCGGGTAACGCAGCAGCCGGCTTCCCCCATCTGGGCGGCCA
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| Amino Acid Sequence |
>hypothetical protein
MTKWLLAAGVLMPFYGAQATQDPEAVYNRVCGACHSGQLPTAPRKGDQEAWAPRLAQGMETLVQHVTQGFKAMPPRGLCMDCSAEDYRVIIHWMSE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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