Pseudomonas protegens CHA0, PFLCHA0_c00170 (htrB1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCGAAGGGTTCCAGGCCGGGCTGTCATGGATCACCGTGCTGAAGAAGCGCGAGCACTATCGCCAGGTGCTGTTCGGCTTCGATGTGCAGCGCGTGGC GCAGATGAGCGATGCCGAGATCGACGACCTGATGCAGGACCCGGGCATCATCCGCAACCGCCTCAAGCTCAACGCCGCGCGGCGCAACGCCCAGGCCTGG CTGGAGCTGGAAGACCCGGTGGCCTTTCTCTGGGCCTTCGTCGGTGGCGTGCCGAAGATCAACCATTTCAAGGACCGCAGCGAAGTGCCGGCGGTGACGC CGGAGGCCGAAGCCATGAGCCGCGGCTTGCGCAAGGCCGGCTTCACTTTCGTCGGCCCGACCATCTGTTATGCGCTGATGCAGGCCTCGGGGATGGTCAT GGACCACACCCTGGACTGTGATCGGTACGCCATCCTGGCCCATGCGCGGTTAGAATAGCCGGCTGGCGACACGCTTCATGACCAAGATCAGGAGTCATTT
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| DNA Sequence for Gene |
>PFLCHA0_c00170
|htrB1
GTGGATAAGTTCAAAGGCGCCCTGCTGGTGGGTGCTCTGCGGTTGTTTGCCCTGCTGCCCTGGCGCGCGGTGCAGGCGGTCGGCGCAGCCATCGGCTGGA TCATGTGGAAGACGCCCAATCGTTCCCGCGAGGTGGTGCGCATCAACCTGGCCAAGTGTTTTCCACAGATGGACCCGGCGGAACGCGAGCGCCTGGTGGG CCAGAGCCTGAAGGACATCGGCAAGTCCCTGACTGAAAGCGCCTGCGCCTGGATCTGGCCGGCCGAGCGTTCCATTGCCCTGGTGCGTGAAGTCGAGGGC CTGGAAGTACTCAAGGACGCCCTGGCCTCGGGCAAGGGCGTGGTTGGCATTACCAGCCACCTGGGCAACTGGGAAGTGCTCAACCACTTCTATTGCAGCC AGTGCAAACCGATCATTTTCTACCGTCCGCCCAAGCTCAAGGCGGTGGACGAACTGCTGCGCAAGCAGCGGGTGCAACTGGGCAACCGCGTGGCGGCTTC CACCAAGGAAGGCATCCTCAGCGTCATCAAGGAAGTGCGCAAAGGGGGGGCAGTGGGCATCCCCGCCGACCCGGAACCGGCCGAATCCGCCGGGATCTTC GTGCCCTTCTTCGCCACCCAGGCCCTGACCAGCAAGTTCGTGCCGAACATGCTGGCCGGCGGCAAGGCGGTCGGCGTGTTCCTCCATGCCCTGCGCCTGC CCGACGGCTCGGGCTACAAGGTGATCCTCGAAGCGGCGCCGGAAGACATGTACAGCACCGATACCGAAACCTCCTGCGCGGCCATGAGCAAGGTGGTCGA GCGTTATGTGGGGGCCTATCCGAGCCAGTACATGTGGAGCATGAAACGCTTCAAGAAGCGCCCGCCTGGCGAGGCGCGCTGGTACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGAGCTGGCACGATCTGTGGATAACCCCGCATCGGGAGTTATCCACAGCACACCGAACAAGGGCGCAGAAGATGTCCGATCATCGCAAGTCGTTCCGCA TCAAGATTTCCCACGAAAGCATCGGCGAATGCCTGGGGCAGACCCGCAACCTGTCCGCCAGCGGCGTCTATGTACAGAGCCCGGCCCTGGCAAGACTGCC CAAGGGCGCGGTGGTCTACGGCCAGGTCCAGGGCCTGCCGGTGACGGCGCCGCGGGTGCGCATGGAAGTGGTGCAAGTGGACGCGGAAGGGATCGCCCTG CGCTACCTGTGAAATAGCCCTGTAGCCGTTGCCGAGCCCGCGAGGCTGCGAAAAGGACCGAAGGGCCTTGCTTGGCGCTCTCTTGTCGAGCCTGTGCGGG TCTTCAGAGCTAGCGAGCAGTGCATCGGAGTGCCGCCCAGCTCGTTCGCAGCCTGCAGCAGCGGCTACCGAGGAGGGGTGGGGTCAGCCTTGAGACTGGC
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| Amino Acid Sequence |
>lipid A biosynthesis lauroyl acyltransferase HtrB
MDKFKGALLVGALRLFALLPWRAVQAVGAAIGWIMWKTPNRSREVVRINLAKCFPQMDPAERERLVGQSLKDIGKSLTESACAWIWPAERSIALVREVEG LEVLKDALASGKGVVGITSHLGNWEVLNHFYCSQCKPIIFYRPPKLKAVDELLRKQRVQLGNRVAASTKEGILSVIKEVRKGGAVGIPADPEPAESAGIF VPFFATQALTSKFVPNMLAGGKAVGVFLHALRLPDGSGYKVILEAAPEDMYSTDTETSCAAMSKVVERYVGAYPSQYMWSMKRFKKRPPGEARWY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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