Pseudomonas protegens CHA0, PFLCHA0_c00040 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGTCTTTGAGCGGACCTTGGGCGAACTGTTGCAGCTCGAGGGCCTGACGCTTAGCTATTACCGTGGTTGGGACAAGGACCGGGAGCTCAGTGAAGTGCTC GCGACCGCCCTCCACCGTGACCAGCAAATGGGTCATACCCAGGCCGGCCCACAACGTGCTGATTTGCGTCTGCGCTTAGGCGGACACAACGCCGCGGACA TCTTGTCCCGTGGCCAGCAGAAGTTGGTGGTCTGTGCCTTGCGCATTGCCCAGGGGCATCTGGTGAGCCAGGCCCGCCGCGGTCAGTGTATTTATCTGGT GGATGACTTGCCGTCCGAGCTGGACGAGCAGCACCGCCGCGCACTTTGTCGCTTGTTGGAAGACTTACGCTGCCAGGTGTTTATCACCTGTGTAGACCAC GAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGC
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| DNA Sequence for Gene |
>PFLCHA0_c00040
|gyrB
ATGAGCGAAGAAAATACGTACGACTCGACCAGCATCAAGGTGCTGAAAGGTTTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGCGACACCGATG ACGGCAGCGGTCTGCACCACATGGTGTTCGAGGTGGTCGATAACTCCATCGACGAAGCGCTGGCCGGTCATTGCGACGACATCAGCATCATCATCCATCC GGATGAATCCATCACCGTGCGCGACAACGGTCGCGGCATCCCGGTCGATGTGCATAAAGAAGAAGGCGTCTCCGCGGCAGAGGTCATCATGACCGTGCTC CACGCCGGCGGTAAGTTCGACGACAACTCCTACAAGGTCTCCGGCGGTCTGCACGGCGTAGGTGTATCGGTAGTGAACGCCCTGTCCGAGGAGCTGATCC TCACCGTGCGCCGTAGCGGCAAGATCTGGGAACAGACCTATGTCCACGGTGTTCCGCAAGAGCGGATGAAAATCGTTGGTGACAGCGAAACCACCGGTAC CCAGATCCACTTCAAGCCTTCGGCTGAAACCTTCAAGAACATCCACTTCAGCTGGGACGTCCTGGCCAAGCGGATCCGTGAACTGTCCTTCCTCAACTCC GGTGTCGGCATCGTCCTCAAGGACGAGCGCAGCGGCAAGGAAGAGCTGTTCAAGTACGAAGGCGGCCTGCGGGCATTCGTTGAATACCTGAACACCAACA AGACTGCGGTCAACCAGGTGTTCCACTTCAACATCCAGCGTGAAGACGGCATCGGCGTGGAAATCGCCTTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTCACCAACAACATTCCTCAGCGCGACGGCGGTACCCACCTGGTGGGCTTCCGTTCGGCCCTGACCCGTAACCTGAACAACTACATCGAGCAG GAAGGCCTGGCCAAGAAACACAAGGTCGCCACCACTGGTGACGACGCTCGTGAAGGCCTGACCGCGATCATCTCGGTGAAGGTGCCGGATCCGAAGTTCA GCTCCCAGACCAAGGACAAGCTGGTTTCTTCCGAAGTGAAGACCGCGGTCGAACAGGAGATGGGCAAGTACTTCTCCGACTTCCTGCTGGAAAACCCCAA CGAAGCCAAGTTGGTGGTGGGCAAGATGATCGACGCTGCCCGCGCTCGTGAAGCGGCGCGTAAAGCCCGTGAAATGACCCGTCGCAAAGGCGCGCTGGAT ATCGCCGGCCTGCCGGGCAAACTGGCGGACTGCCAGGAAAAGGATCCGGCCCTGTCCGAACTCTACCTGGTGGAAGGTGACTCTGCTGGCGGTTCCGCCA AGCAGGGCCGCAACCGCAAGACCCAGGCGATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAGAAGGCACGCTTCGACAAGATGATCTCCTCGCAAGA GGTGGGCACCCTGATCACCGCGCTGGGCTGCGGCATCGGCCGTGAAGAGTACAACATCGACAAGCTGCGTTATCACAACATCATCATCATGACCGATGCT GACGTTGACGGTTCGCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGTCAGTTGCCGGAGCTGATCGAGCGCGGCTACATCTACATCGCCCAGCCGC CGCTGTACAAGGTCAAGAAAGGCAAGCAAGAGCAATACATCAAAGACGACGACGCCATGGAAGACTACATGACCCAGTCGGCTCTGGAAGATGCCAGCCT GCACTTGAACGAAGAAGCCCCCGGGATCTCCGGCGAGGCGCTGGAGCGCCTGGTCAACGACTTCCGCATGGTGATGAAGACCCTCAAGCGCCTGTCGCGC CTGTACCCGCAGGAGCTGACCGAGCACTTCATCTACCTGCCGGCCGTGACCATGGAGCAACTGTCCGACCACGCCGCCATGCAGGATTGGCTGGCCAAGT ACGACGCCCGCCTGCGCACTTCCGAGAAGTCCGGCCTGGTCTACAAGGCCAGCCTGCGCGAAGACCGTGAACGCAATGTGTGGCTGCCAGAGGTCGAGCT GATCTCCCACGGCCTGTCCAACTACGTCACCTTCAACCGCGACTTCTTTGGCAGCAACGACTACAAGACCGTCGTCTCCCTCGGCGCTCAACTGAGCACC CTGCTGGACGAAGGCGCGTATGTTCAGCGCGGCGAACGCAAGAAAGCCGTCACCGAGTTCAAGGAGGCCCTGGACTGGCTGATGGCGGAAAGCACCAAGC GCCACACCATCCAGCGATACAAAGGTCTGGGCGAGATGAACCCTGACCAGCTGTGGGAAACCACCATGGACCCAAGCATGCGCCGCATGCTCAAGGTGAC CATTGAAGACGCCATCGGCGCCGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCTCGTCGCGACTTCATCGAAAGCAACGCCCTGGCGGTG TCCAACCTGGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCAGCGACACAGCTGAAAATAAAAAGGCCGACGCTTGCGTTGGCCTTTTTTATTGGCAGATTGTTCAATCCCTCATCCATAACGATTTACGTTTTTATC CGGACAAGGCAGTCATGGCAAATGCTCAAGAAAATTGTTGAAGATGAATATGCCGGTAATCGTTGTCACACCCATGAGTGGTTAAACCCCGACTCGATGC AGGTGTTGTCCGCGTTCAACCGCCTGGACGGAAAGGCTTTCAGCTCGACGGTTTTTTTCTTCAGTGATCAGACCCTGATGCATATCGGGGGCGGTGCGGC CGATCAGTATGTGGTCTTTATCGCCCAGGACGTCGACCAGTCGTTGCAGACCCTGCTCAGCGCAGACACCCCTGATGATCAGCGGGTTGAGTTGGTCGCG GGCGGCCAGTCCGGTAGTTACCCTCGCTATCAGTGTGTGGCTAAAGAGCGAGCGAGACAGGCCCTGGCTTATTTCTCGGCCTATGGCTCGGCTGATCCCG
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGDSETTGTQIHFKPSAETFKNIHFSWDVLAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEDYMTQSALEDASLHLNEEAPGISGEALERLVNDFRMVMKTLKRLSR LYPQELTEHFIYLPAVTMEQLSDHAAMQDWLAKYDARLRTSEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVSLGAQLST LLDEGAYVQRGERKKAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSMRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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