Pseudomonas protegens CHA0, PFLCHA0_c00020 (dnaN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens CHA0, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGAGCTGCCTCATGATGCAGCGTTCTTCATTGCCCAGCGCATTCGCTCCAACGTCCGTGAACTGGAAGGTGCCCTGAAACGGGTCATCGCCCATTCGC ACTTCATGGGCCGCGATATCACCATCGAGCTGATTCGCGAATCCTTGAAGGACCTGCTGGCGCTGCAGGACAAGCTGGTGTCTGTGGATAACATCCAGCG CACCGTCGCCGAGTACTACAAGATCAAGATTTCCGATCTGCTGTCCAAGCGGCGTTCCCGTTCGGTGGCCCGCCCGCGTCAGGTGGCCATGGCCCTGTCC AAGGAACTGACCAACCACAGCCTGCCGGAAATCGGCGATGTGTTCGGCGGTCGCGACCACACCACGGTTCTGCACGCCTGCCGCAAGATCAATGAACTTA AGGAATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGTACTCTGACCACTTGATGACTCCAACGCAGCTTATTAAGGCAAGGGACTAGACC
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| DNA Sequence for Gene |
>PFLCHA0_c00020
|dnaN
ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCCGGCGTCGTCGAACGCCGCCAGACCTTGCCGGTGCTTTCCAACGTGC TGCTGGTTGTCGAAGGCCAGCAACTTTCGCTGACCGGTACCGACCTGGAAGTCGAGCTGGTCGGTCGTGTGCAACTTGAAGAGCCAGCCGAGCCGGGGGA AATCACCGTTCCCGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCCAACGATGCCCTGATCGACATCAAGGTCGACGAGCAGAAGCTGGTGGTGAAG GCCGGGCGTAGCCGCTTCACCCTGTCGACCCTGCCGGCCAACGACTTCCCGACTGTGGAAGAAGGCCCGGGCTCGTTGACCTGCCAGCTGGAGCAGAGCC GACTGCGCCGCCTGATCGAACGCACCAGCTTCGCCATGGCCCAGCAGGATGTGCGCTACTACCTCAATGGCATGCTGCTGGAAGTGTCCGCCGGGATCAT CCGCGCCGTGGCCACCGACGGTCACCGTCTGGCCATGTGCTCGATGCAGGCGGACATCGGCCAGCCGGATCGCCACCAGGTGATCGTGCCGCGCAAAGGC ATCCTGGAACTGGCGCGCCTGCTCACCGAGCCCGATGGCAACGTCAGCATTGTCCTGGGCCAGCACCACATTCGTGCCACCACCGGCGAATTCACCTTCA CCTCCAAGCTGGTGGACGGCAAGTTCCCAGACTACGAGCGCGTGCTGCCCAAAGGCGGTGACAAGCTGGTACTGGGTGATCGCCAGGCGCTGCGCGAAGC CTTCAGCCGTACCGCGATCCTGTCCAACGAGAAGTACCGCGGCATCCGTCTGCAACTGGCCAATGGTCAGCTGAAGATCCAGGCCAACAACCCGGAGCAG GAAGAAGCGGAAGAAGAAGTGGGCGTGGAATACAACGGCGGTTCCCTGGAAATCGGCTTCAACGTCAGCTACCTGCTGGACGTTCTGGGCGTGATGACCA CCGAACAGGTTCGCCTGATCCTGTCCGATTCCAACAGCAGTGCGCTGGTGCAGGAATCCGACAACGACGACTCGGCTTACGTTGTCATGCCGATGCGCCT GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCATGCTCAGCAGAAGCTAGATGTCCCTCAGTCGCGTCTCGGTCACCGCGGTGCGCAATCTGCACCCGGTGACCTTCTCCCCCTCCCCCCGCATCAACCT TCTCTACGGCGCCAACGGCAGTGGCAAAACCAGCGTGCTGGAAGCCATCCACCTGCTGGGGCTTGCCCGCTCGTTCCGCAGTGCCCGCCTGCTGCCGGTG ATCCAGTACGAGCAGCTGGCCTGCACGGTGTTCGGCCAGGTGGAGTTGGCCCAGGGCGGCCATAGCAGCCTGGGGATATCCCGTGATCGCCAGGGGGAAT TCCAGATCCGCATCGACGGTCAGAATGCCCGCAGCGCGGCGCAGTTGGCCGAGATTCTGCCGCTGCAGTTGATCAACCCGGACAGCTTCCGCCTGCTGGA GGGCGCACCGAAGATCCGTCGGCAATTCCTGGATTGGGGAGTGTTCCATGTGGAACCACGCTTCATGTCCACCTGGCAGCGCTTGCAGAAGGCCCTGCGG
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| Amino Acid Sequence |
>DNA polymerase III subunit beta
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLVVK AGRSRFTLSTLPANDFPTVEEGPGSLTCQLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIRAVATDGHRLAMCSMQADIGQPDRHQVIVPRKG ILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQANNPEQ EEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALVQESDNDDSAYVVMPMRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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