Pseudomonas protegens Pf-5, PFL_6087 (tssB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CGGCCGAAAGCATCGAGAAACAGGTCAGCGAACAAGTAGGCTCGGCCAGCGGTGTAGACCTCACGGCCCTCAAGCAACCCCTGCGCCTGGCGCTACAGGT GCTGGGCCAGCACGCCCCGCAAGGCGCGCAGAACGCGGTCGAGGAACACGCCGATGGGCCGTCCACCGAAGAGCCAGGTGCGCCCGCAGCGCCAGCCCCG GTACGGGTTTCCGGCGAGATCAGCAGCCGCGAAGACGTGCTGCGCAGCCTTGACCGGCTGCTGGCCTACTACAGCCGCCACGAGCCTTCGAGCCCGTTGC CGGTGCTGCTCAACCGGGCCAAGAACCTGGTCAACGCCGACTTCGCGGCCATCGTGCGCAATCTGATTCCCGACGGCATGTCCCAATTTGAAAACCTGCG CGGCCCTGAATCCGACTAACCCCGGAACAACCGAGCAGTATCGTCAGCGGCAACCACCGACCGACGCCAACACCGTCGCAGCAGCGACCAGGAGCACAAC
DNA Sequence for Gene
>PFL_6087 |tssB
GTGGCGAAGCAAAGTTCTCAAAAGTTCATCGCGCGCAACCGCGCGCCCCGGGTGCAGATCGAGTACGACGTCGAACTCTACGGCGCCGAGAAAAAGGTCC AGCTGCCCTTCGTCATGGGCGTGATGGCCGACCTCGCCGGCAAGCCCGTGGAGCCCCTGGCGGCCGTGGCCGATCGCAAGTTCCTGGAAATCGACGTCGA TAACTTCGACTCGCGCCTCAAGGCCATGCAGCCTCGGGTGGCCTTCCACGTGCCCAACGAACTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTC GAGAGCATGGACGACTTCAGCCCGGCGGCCGTGGCGCGCAAGGTCGATTCGTTGAACCAGTTGCTGGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCT ACATGGACGGCAAGACCGGCGCCGAAGAAATCATCATGAAAGCCATCAAGGATCCGGCGTTGCTCCAGGCCCTGGCCAGTGCGCCAAAGCCTGCTGACTC CGAGCCGAACGCGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATCAGGACCAACGATCATGACCGAATTGATGCGTGACAATCAGGCGCAACCCGGCGCCACCGAGCAGGCCAGCGAATTCGCATCGCTGCTGCTGCAGGAA TTCAAGCCCAAGACCGAGCGTGCTCGCGAAGCCGTGGAAACCGCGGTGCGGACCCTGGCCGAACAGGCCCTGGCGCAGACCGACCTGGTGTCCAACGACG CCATCAAGTCGATCGAGTCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAACCAGGTGATCCATCACCCGGAATTCCAGAAGCTGGAAAG CGCCTGGCGCGGCCTGCACTACCTGGTGAACAACACCGAGACCGACGAGCAGCTCAAGATCCGCGTGCTCAACATCTCCAAGCCGGAGCTGCACAAGACC CTGAAGAAATTCAAGGGCACGGCCTGGGACCAGAGCCCGCTCTTCAAGAAGATGTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCCTACGGCTGCC
Amino Acid Sequence
>type VI secretion protein TssB
MAKQSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPVEPLAAVADRKFLEIDVDNFDSRLKAMQPRVAFHVPNELTGEGNLSLDITF ESMDDFSPAAVARKVDSLNQLLEARTQLANLLTYMDGKTGAEEIIMKAIKDPALLQALASAPKPADSEPNA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site