Pseudomonas protegens Pf-5, PFL_6085 (fha)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCTGTGCGGCCCGCTCCAAGTGCAAGAAATCCGCGTCATATTCCAGGTCTTCGCCACAAGGCGAAGTTGCTGAAACCGCGGCGAGCAACATCGGT ACATCCACCTGGTTTGATCTCCCTATCAGCCTGCAGGACAGTCAGGCAATTAATGCACTAGTTTGTTTGTGAACTCGCGCACATTTCTTGGTTTATATGG ACTCGTTGATACTAGTGAGCCATCATCCGTGTTCAAGAAGTTGTGCATTTTTGGTGTAGTAGTTGTGCCTTGTCAAGGTAAGCTATTCGCCCCGCATGAC AGTGTTATGTCGCCTTATAGCTCCTTGACCGGCGAGTCAGATCGGGGCGGTACGAAAAGCTTTTGTCATGCGTGTAGTTTAAGTTAAGCGATCATGCTGT GAACGGCGCTGTTTAAAGGATTTTTTGCGGACTTTTCATTTTTTCACGGAACTTTTTTCCCTTCGCCGGTTCGCACGCGGAAGTACAGCAAGGAGGCGCG
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| DNA Sequence for Gene |
>PFL_6085
|fha
ATGTCGCTGTGTTTGACTATCACTAGTTATCACAAGATTACCCCTGGTCAATGCCCTGAAAAACTAATGGACCAGGGAATGATGGCAATTGGCCGCAGTT CCGATAATGACTGGGTACTTCCTGATCCCGAACGCTTAGTTTCCGCGCGGCACTGTGTCATCCAATACAAGGATGGCCGTTATTATTTGACCGATAACAG TACTAATGGTGTGGAGTTAGTCCGTGCCGGTATTCGTATGCGCCGGGGTAGCAGCGAGCCTCTGGAAGATGGCGAGGTTATTCGCATTGGCGATTATGAA ATCAGTGCGCGCATCGATTTCAGTCTGAACCGCCCGGGGGCTGAACCCTTTTCCGGGGACAGCTCCAATAGTTTCGAGGCGCTGATGGGGCGTCAGGCGG CTTCGCCGACCCCCATCGAACCGATTTCCATGGCCCCGGTGGCGCACTTCCAGGGTGCCTCGGCCCAGGACACCTTTCCCGATCTGTTCGACTTTCTCGC CCCCAGCGCGACCCCGCCGGCCACCCAACCGGACCACGTGCCGGCCGAGCAGCACGATTTTCGCCCGCCGACCCCCACCGCGGTGCCCCAGCCCGTGGCA CCGCCTGAGCCATCGGCGCCCCAGGGCGGGGCGGTGATTCCGGAGGACTGGGACCTGTTCGGCTCGACGCCCGCAAGCCCTGCGCCAGTGCCCAGTGCGC CGCCCGTGGTTGCCCCGCCGGTGGTTGCCGCCGCGCCGATTGCCCACCAGGCCTCGTTCGCGGCAGAACCCGCGCAGCCGCAGCCGCAGCCGCAGCCGCA GCCGCAGCCGATCGCCCAGGCGCCCGTGGCACCGGTGGTTTCCGAAGTGGAGCTGGCTCCTGTTGTCACGCCCGCGCCGGCCCCGGTCGCCCCCCAGGGG GATCTGCTCCAGGCCTTCCTGCGCGGGGCCGGGCTCGATCAACTGCGTATCGAGCCGCAGCAGGCCCAGGCCCAGATGGAAAGCCTGGGTCGCAGCTACC GGTTGATGGTCGAGGGCCTGATCGATGTATTGCGTGCCCGTAGCAGCCTCAAGGGCGAGTTCCGCATGCAGCAGACGATGATCCGCCCGGTGGAAAACAA CCCGCTGAAGTTCGCCCCCAATGTGGACGAGGCCATGCTCCTGCTGCTGCGCCACAGCAACCAGGCATTCATGGCTCCGGATCAGGCCGTGCAGGACAGT TTCGATGACCTGCGGGCGCACCAGCTGGCGGTCATGGCCGGTGTGGAAGCGGCCATCAAGCACCTGCTGGGGCGCTTCGAGCCCACTGAACTGGAAGCTC GCATGGCTCGCCCCGGCGGCCTGGGCAATCTGTTCAGCGGCTCGCGCCAGGCGCAGAACTGGCAGCAGTTCACTGCACTCTACAAACAGATTTCCCAAGA GGCCCAGGACGATTTCCAGGACCTCTTCGGTCGTGAGTTCAGCCGCGCCTATGAAGAACACACCCACCGGCTGCGCCGTTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCGCCTGGAACACCCGAAAAACACGGATACACGGACAGCTGATACGTCATTGAGGACGCAGGATGATTCAACGATTGCTGACATTGGTTGCCATGCTG GTACTGGCGGCCTGTGCCAAGGACACACCACCTCCCGGCGAACCGGCCAAGGAAGCGCCCGGCGCCACGACTGTGGAGCTGCATTTCCAGGCGGTCAGCG GGCTCAACCCCGGGCCTGATGGCCAGAGCACGCCGGTGCGGGTACGGATCTTCGAGCTGAAGAATCCGGCCACCTTCATGCGCGCCGACTACTTCGCCCT GGCGGAGCGGGCGCCGGCTACCCTCGGCCCGGACCTGATCGACCAGGATGAAGTGCTGGTCAAGCCCGGCGACCAGTTCACCCTCAAGCGCACCCTGGAC CCGGCCACCCGTCAGGTCGGCCTGCTGGTGGGCTATCGCGAAGTGGACCAGGCCCTGTGGCGGGTCGGGGTCAACACCGCGCAGCGCCTGAGCAACCAAT
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| Amino Acid Sequence |
>type VI secretion protein Fha
MSLCLTITSYHKITPGQCPEKLMDQGMMAIGRSSDNDWVLPDPERLVSARHCVIQYKDGRYYLTDNSTNGVELVRAGIRMRRGSSEPLEDGEVIRIGDYE ISARIDFSLNRPGAEPFSGDSSNSFEALMGRQAASPTPIEPISMAPVAHFQGASAQDTFPDLFDFLAPSATPPATQPDHVPAEQHDFRPPTPTAVPQPVA PPEPSAPQGGAVIPEDWDLFGSTPASPAPVPSAPPVVAPPVVAAAPIAHQASFAAEPAQPQPQPQPQPQPIAQAPVAPVVSEVELAPVVTPAPAPVAPQG DLLQAFLRGAGLDQLRIEPQQAQAQMESLGRSYRLMVEGLIDVLRARSSLKGEFRMQQTMIRPVENNPLKFAPNVDEAMLLLLRHSNQAFMAPDQAVQDS FDDLRAHQLAVMAGVEAAIKHLLGRFEPTELEARMARPGGLGNLFSGSRQAQNWQQFTALYKQISQEAQDDFQDLFGREFSRAYEEHTHRLRRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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