Pseudomonas protegens Pf-5, PFL_6084 (tssJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CAAGGGCGAGTTCCGCATGCAGCAGACGATGATCCGCCCGGTGGAAAACAACCCGCTGAAGTTCGCCCCCAATGTGGACGAGGCCATGCTCCTGCTGCTG CGCCACAGCAACCAGGCATTCATGGCTCCGGATCAGGCCGTGCAGGACAGTTTCGATGACCTGCGGGCGCACCAGCTGGCGGTCATGGCCGGTGTGGAAG CGGCCATCAAGCACCTGCTGGGGCGCTTCGAGCCCACTGAACTGGAAGCTCGCATGGCTCGCCCCGGCGGCCTGGGCAATCTGTTCAGCGGCTCGCGCCA GGCGCAGAACTGGCAGCAGTTCACTGCACTCTACAAACAGATTTCCCAAGAGGCCCAGGACGATTTCCAGGACCTCTTCGGTCGTGAGTTCAGCCGCGCC TATGAAGAACACACCCACCGGCTGCGCCGTTCCTGAGCGCGCCTGGAACACCCGAAAAACACGGATACACGGACAGCTGATACGTCATTGAGGACGCAGG
DNA Sequence for Gene
>PFL_6084 |tssJ
ATGATTCAACGATTGCTGACATTGGTTGCCATGCTGGTACTGGCGGCCTGTGCCAAGGACACACCACCTCCCGGCGAACCGGCCAAGGAAGCGCCCGGCG CCACGACTGTGGAGCTGCATTTCCAGGCGGTCAGCGGGCTCAACCCCGGGCCTGATGGCCAGAGCACGCCGGTGCGGGTACGGATCTTCGAGCTGAAGAA TCCGGCCACCTTCATGCGCGCCGACTACTTCGCCCTGGCGGAGCGGGCGCCGGCTACCCTCGGCCCGGACCTGATCGACCAGGATGAAGTGCTGGTCAAG CCCGGCGACCAGTTCACCCTCAAGCGCACCCTGGACCCGGCCACCCGTCAGGTCGGCCTGCTGGTGGGCTATCGCGAAGTGGACCAGGCCCTGTGGCGGG TCGGGGTCAACACCGCGCAGCGCCTGAGCAACCAATATCAGATCGTCCTCGACGTCCGCGCGGTCAGCGCCGAGCTCGTGGCATCCCCATCCAGCCCTGC CCAATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAATCGGAGCAACCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACCCAGCACTTCCAGCAGCATGACCGTTACCTGGAAA ACCTCATCGACGCCCGCAGCCGCCCGCTGTCGACGGGAGCCTGGGGGTTCTCCGAGCTGCGTATCGATCAGGGCCTGCTGGCCCAGGGCAAGCTGGCCAT CGTCAGCGCCCGTGGCCTGCTGCCCGACGGCACGCCGTTCAACATTCCCCATGACGACCTGGCGCCCAGCCCGTTGTGCATCGACGACAACCTGCGTGAC GGCCTGGTGTACCTGGCGCTGCCCCTCAAGCGCGCCGGCGCCCGGGACACCGTGGACGAGGGCGAAGAGCTGGGCGGTGCCCGCTACCTGAGCCAGGTGC GCGAGGTGCGTGACGACAACGCACCGTTCGAGAACCGCGCGCCGGTGGCCGTGGGCTCTCGGGCCCTGCGCCTGCTCACCGCCCAGGACGGCCTCAGCGA
Amino Acid Sequence
>type VI secretion lipoprotein TssJ
MIQRLLTLVAMLVLAACAKDTPPPGEPAKEAPGATTVELHFQAVSGLNPGPDGQSTPVRVRIFELKNPATFMRADYFALAERAPATLGPDLIDQDEVLVK PGDQFTLKRTLDPATRQVGLLVGYREVDQALWRVGVNTAQRLSNQYQIVLDVRAVSAELVASPSSPAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site