Pseudomonas protegens Pf-5, PFL_6083 (tssK)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTTGCCATGCTGGTACTGGCGGCCTGTGCCAAGGACACACCACCTCCCGGCGAACCGGCCAAGGAAGCGCCCGGCGCCACGACTGTGGAGCTGCATTT CCAGGCGGTCAGCGGGCTCAACCCCGGGCCTGATGGCCAGAGCACGCCGGTGCGGGTACGGATCTTCGAGCTGAAGAATCCGGCCACCTTCATGCGCGCC GACTACTTCGCCCTGGCGGAGCGGGCGCCGGCTACCCTCGGCCCGGACCTGATCGACCAGGATGAAGTGCTGGTCAAGCCCGGCGACCAGTTCACCCTCA AGCGCACCCTGGACCCGGCCACCCGTCAGGTCGGCCTGCTGGTGGGCTATCGCGAAGTGGACCAGGCCCTGTGGCGGGTCGGGGTCAACACCGCGCAGCG CCTGAGCAACCAATATCAGATCGTCCTCGACGTCCGCGCGGTCAGCGCCGAGCTCGTGGCATCCCCATCCAGCCCTGCCCAATAGGCAATCGGAGCAACC
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| DNA Sequence for Gene |
>PFL_6083
|tssK
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACCCAGCACTTCCAGCAGCATGACCGTTACCTGGAAAACCTCATCGACGCCC GCAGCCGCCCGCTGTCGACGGGAGCCTGGGGGTTCTCCGAGCTGCGTATCGATCAGGGCCTGCTGGCCCAGGGCAAGCTGGCCATCGTCAGCGCCCGTGG CCTGCTGCCCGACGGCACGCCGTTCAACATTCCCCATGACGACCTGGCGCCCAGCCCGTTGTGCATCGACGACAACCTGCGTGACGGCCTGGTGTACCTG GCGCTGCCCCTCAAGCGCGCCGGCGCCCGGGACACCGTGGACGAGGGCGAAGAGCTGGGCGGTGCCCGCTACCTGAGCCAGGTGCGCGAGGTGCGTGACG ACAACGCACCGTTCGAGAACCGCGCGCCGGTGGCCGTGGGCTCTCGGGCCCTGCGCCTGCTCACCGCCCAGGACGGCCTCAGCGACTACGCCGCCATTGG CGTGGTGCGGGTCAAGGAGAAACGCGCCGACCGTGCTCTGGTGCTGGACGACAGCTACATTCCGCCGGTGCTGGACGTGGCCGCGTCCAAGCCGTTGAGC GCCTTTCGCAGCGAGCTGCTGGGCCTGCTGCACCAGCGCGGCGAAGCCCTGGCCGGGCGCGTGGTGGCATCGGGCGCGGGGGGCGCTTCGGAAATCGCCG ACTTCATGCTCCTGCAACTGGTGAACCGCGCCCAGCCCCTGGTCAACCACCTGAGCCAGATCAGCCCGCTGCACCCCGAGCGCCTGTTCAGCGAGCTGGT GAGCCTGGCCGGCGAGTTCTCGACCTTCACCCACAGCGCCCGGCGCCCTGAGCAATACCCGCAGTACCAGCACGATGAGCTGGCCATGAGTTTCGCCCCG GTGATGCAGGCCCTGCGTGAAGCGCTGTCGATGCTGATCGACAGCAAGGCAACGCCGATCCCCATCGTCGAGAAAGCCTACGGCGTACACGTGGCGATGC TGGCCGACCGCACCCTGCTGGAGAACGCCAGCTTCATCCTGGTGGTGCGTGCCGACGTGCCGGGCGAAACCCTGCGCGGGCGCTTCGCCCAGCAGAGCAA GGTGGGTTCGGTGGAGCACATCCGCGACCTGGTCAACCTGCAGCTGCCGGGCATCGGCCTGCTGCCGCTGCCGGTGGCGCCGCGGCAACTGCCGTACCAC GCAGGCTCGACCTACTACGAGCTGGACCGTGGCAGCGAGCACTGGAAACAACTGGTTCACTCCGGCGGCTTCGCGTTCCACGTCGCGGGAGAATTCCCGG GCTTGAACCTGGCCTTCTGGGCCATTCGAGGATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCGATGCATCCTTTCGACGATTCGCCAGGGCAGCCGTCCCCGCCCAACGACCGTACCCAATTCATGCCGCGCCCCGGTGGCCGTGCTCCCGAGCCCG GGCGCCCAGCTGCTGCGCCCGCGCCGTCGTTGGCCATGCCGGCGGCGCCGCTGCCGGCCGGCCAGGCCCGTGGCCTGAACCCCCTGGAAAGCGCCGCGGG CCCACTGCTGGCCTTGCTCACAAGGCTGCGCAGCACCCTGGCGCACCCGGCGCCGGCCAGCCTGCGGGCGCAACTGCTGGCCTACCTGCGCCAGTTCGAG GAGCGCGCGGAAGCCGCCGGCGTGCCGCGCAACGACGTGCTGCTGGCGCGCTATGCGCTCTGTACTGCCCTGGATGAAGCCGTGCTGAGCACGCCCTGGG GCAGCACCAGCGACTGGGGCAAGCAGAGCCTGCTGATCACCGTGCACAACGAGGCCTGGGGCGGCGAGAAGGTCTTCCAGCTGCTGGAGCACTGCCTGCA
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| Amino Acid Sequence |
>type VI secretion protein TssK
MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSTGAWGFSELRIDQGLLAQGKLAIVSARGLLPDGTPFNIPHDDLAPSPLCIDDNLRDGLVYL ALPLKRAGARDTVDEGEELGGARYLSQVREVRDDNAPFENRAPVAVGSRALRLLTAQDGLSDYAAIGVVRVKEKRADRALVLDDSYIPPVLDVAASKPLS AFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQLVNRAQPLVNHLSQISPLHPERLFSELVSLAGEFSTFTHSARRPEQYPQYQHDELAMSFAP VMQALREALSMLIDSKATPIPIVEKAYGVHVAMLADRTLLENASFILVVRADVPGETLRGRFAQQSKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYH AGSTYYELDRGSEHWKQLVHSGGFAFHVAGEFPGLNLAFWAIRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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