Pseudomonas protegens Pf-5, PFL_6063 (spoT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTGGGTTAAAACAGCACTTCCCAAAACCGCTGCAAGCGCTTTACATTGGCACTTGCAGCGCGTTGAAGGGCTTGGTTAAAAAATCAGCGCTTCCCTTA ACGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCGAAAGTAGCAT GGGAAAACGACAAGCCTACCGTTGTCGCCCTGCGCGAAATCGCTGAAGGCCTGATCGACTACGCAGCCATCGCCGAAGCCGAAATCGTTGAAGATGAGCC GCTTTTCGCTGCTTTCGAGGACGAGTCCAACGAGGCCGTCTGAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCTTACGGCAGGAGACATC
|
|
| DNA Sequence for Gene |
>PFL_6063
|spoT
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTATCTCGGCACGGACCAGGTCAATCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAACGCCGTCGCAGCGGCGAGGCGTACGTCACGCACCCACTCGCGGTAGCGAACATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCGATGCTGCATGACGTCATCGAAGACACCGGCATCGCCAAGGAAGCGCTCAGCGCGCAGTTCGGCGAAACCGTGGCCGAATTGGTGGATGGGGTC AGCAAACTGACCCAGATGAACTTCGAAACCAAGGCCGAAGCCCAAGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTACTTTCCGGCGAGAAGCGTCGGCGGATCGCCAAGGAAACCCTGGAGATCTACGC CCCCATCGCCAACCGCCTGGGCATGCATGCCATCCGCATCGAATTCGAAGACCTGGGCTTCAAGGCGATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAGGAATCCCTCAGCCACTGCCTGGCCATCGACGGCATCCAGGGCGAGGTCA GCGGTCGCCAGAAGCACCTGTACGGCATCTACAAGAAGATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTATGCGTTCCGCATCATCGT CGACAAGGTAGACACCTGCTATCGCGTACTCGGCGCTGTACATAATTTGTACAAGCCGCTGCCGGGACGCTTCAAGGACTACATCGCCATTCCCAAGGCC AACGGCTATCAGTCGCTGCATACCACGCTGTTCGGCATGCACGGAGTACCGATCGAGATCCAGATTCGTACCCGGGAAATGGAAGAAATGGCCAATAACG GCATCGCCGCCCACTGGCTGTACAAATCCAGTGGCGACGAACAGCCCAAAGGCACTCACGCCCGCGCCCGCCAATGGGTCAAGGGCGTGCTGGAAATGCA GCAACGCGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACCGCGGTGGACTTCGCCTACGCGGTTCACACCGACGTCGGCAACAGCTGCATCGCCTGCCGGATCAATCGTCGCCTGGCGCCGC TGTCCGAACCCCTGCAAAGCGGTTCCACAGTGGAAATCGTCAGCGCCCCGGGCGCGCGCCCGAACCCGGCCTGGCTGAATTTCGTGGTCACCGGCAAGGC CCGCACCCATATCCGCCATGCTCTCAAGCTGCAGCGCCGCTCCGAGTCCATCAGCCTCGGCGAACGCTTGCTGAACAAGGTGCTCAACGGCTTCGACAGC TCCCTGGAAAAGGTCCCGGCCGAACGCATCCAGGCGATTCTCCAGGAATACCGCCTGGAACTGATCGAAGACCTGCTGGAAGACATCGGCCTGGGCAACC GCATGGCCTACGTTGTGGCGCGCCGCCTGCTGGGCGAAGGCGAACAGCTGCCAAGCCCGGAAGGCCCGCTGGCAATCCGCGGCACCGAAGGCCTGGTGCT GAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGATCCGATCGTCGGCCACCTGTCCGCCGGCAAGGGGATGGTGGTGCACCTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCATAACCCGGAAAAGTGCATCCAGCTCTCCTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGCGTAGAACTGGAAC ACCAACGCGGCCTGATCGCGCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAACATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTACACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTCATCCGCATCACCCGCATGCGT GCGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCGTCCATTACAAGGAGTCATTCATGACCAAGACAGTTATCACCAGCGACAAGGCACCTGCTGCCATCGGCACCTACTCCCAGGCGATCAAGGCTGGCA ACACCGTCTACATGTCCGGCCAGATCCCTCTGGACCCCAAGACCATGGAGCTGGTGGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAAAACCTCAA GTCGGTAGCCGAGGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTATTTCCAACAGCCTTACCCAGCCCGCGCCGCCATTGGCGTGGCCGCCCTGCCAAAGGGTGCACAGGTTGAAATGGATGCCATTCTGGTCATCG AGTAACACCCGCGGCGCAGCCCTCAAGGCTGCGCCGTTTTCGTTCTGAAAGGATTTCGTCATGCGCCAAGCGCTAGCTGTTTCGCTGCTCGCCGTACTGC
|
|
| Amino Acid Sequence |
>guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKVPAERIQAILQEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|