Pseudomonas protegens Pf-5, PFL_5760 (gbdR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01965 DJ-1/PfpI family IPR002818 DJ-1/PfpI 20 184 3.8E-16
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 240 323 3.4E-28
CDD cd03136 GATase1_AraC_ArgR_like - - 18 202 2.41113E-90
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 276 323 7.17E-11
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 246 321 1.6E-21
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 15 205 2.91E-47
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 224 274 2.91E-9
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 12 213 2.6E-57
PANTHER PTHR43130 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 13 263 3.1E-49
FunFam G3DSA:1.10.10.60:FF:000090 Transcriptional regulator ArgR, AraC family - - 220 325 4.7E-58
Gene3D G3DSA:1.10.10.60 - - - 220 324 5.1E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.