Pseudomonas protegens Pf-5, PFL_5726 (soxA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGAACATGTTCTTCAACTGCGGTTGGGGCACTGGTGGCTTCAAGGCCACCCCGGGTTCGGGCAACGTGTTTGCCGCGAGCCTCGCCAAGGGCGAGATG CATCCATTGGCCGCCCCTTTCTCCATCGACCGTTTCCACAACGGCGCGCTGATCGACGAACACGGCGCTGCTGCGGTCGCCCACTAAAAGGACAACTCCC TATGTTGCATATCTTCTGTCCTCACTGCGGCGAGCTGCGCTCCGAAGAGGAATTCCATTCGTCCGGCCAGGCGCACATTCCCCGGCCCCTGGACCCCAAC GCCTGCACCGACGAGGAGTGGGGCGACTACATGTTCTTCCGCGACAACCCTCGCGGCCTGCACCACGAGTTGTGGATCCACGCCGCCGGTTGCCGCCAGT ACTTCAACGCTACCCGCGACACCGTGACCTACGAAATTCTTGAGACCTACAAGATCGGCACCAAGCCGCAATTCACCGCCAAGGCTGCTGGAGAGAAGGT
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| DNA Sequence for Gene |
>PFL_5726
|soxA
ATGAGCCAGACCAATCGCCTGTCCAACGGCGGACGCATCGACCGCAACAAGGTCCTGACCTTCACCTTCAACGGCCAGAGCTACAAGGGTTTTGAGGGCG ACACCCTGGCCTCGGCCCTGCTGGCCAACGGCGTGGACATCATCGGCCGCAGCTTCAAGTACTCCCGGCCTCGGGGCATCTTCGCCGCAGGCTGCGAGGA GCCCAACGCGGTGCTGCAGATCGGTGCCACCGAAGCCACCCAGATCCCCAACGTGCGCGCCACCCAGCAGGCGCTGTACCAGGGCCTGGTCGCCACCAGC ACCAACGGCTGGCCCAGCGTCAACAACGACATGATGGGGATTCTCGGCAAGGTCGGCGGCAAGCTGATGCCGCCGGGCTTCTACTACAAGACCTTCATGT ACCCGCAATCGTTCTGGATGACCTACGAGAAGTACATCCGCAAGGCGGCGGGCCTCGGTCGCTCGCCCACCGAGAACGATCCGGACACCTACGACAACAT GAACCAGCACTGCGACGTGCTGATCGTCGGCGCCGGCCCCGCGGGCCTTGCCGCCGCCCTGGCAGCGGCCCGCAGTGGCGCCCGGGTGATCCTCGCCGAC GAGCAGGAAGAGTTCGGCGGTACCCTGCTGGACAGCCGCGAGAGCCTGGACGGCAAGCCGGCGGCGGAGTGGGTGGCCAGTGTGGTTGCCGAACTCCAGT CGCTTCCGGATGTGTTGCTGCTGCCACGGGCCACGGTCAACGGCTACCACGACCACAACTTCCTGACCATTCACGAGCGTCTCACCGATCACCTCGGCGA CCGCGCGCCCATCGGCCAGGTACGCCAGCGCATCCATCGGGTCCGCGCCAAGCGCGTGGTGCTGGCCACCGGCGCCCATGAGCGGCCGCTGGTCTACGGC AACAACGACGTGCCGGGCAACATGCTGGCTGGTGCCGTCTCCACCTATGTGCGGCGCTACGGCGTGGCCCCGGGCAAGAAACTGGTGCTGTCCACCAATA ACGACCACGCCTACCGTGTGGCCCTGGACTGGCTCGACGCCAGCCTGCAAGTGGTGGCCATCGCCGATGCGCGGCACAACCCGCGCGGCGCCCTGGTGGA AGAAGCCCGGGCCAAGGGCATTCGCATCCTCACCTCCAGCGCGGTGATCGAGGCCCGTGGCAGCAAGCATGTGACCGGCGCGCGTGTAGCGGCCATCGAC GTCAAGGCACACAAGGTCACCAGCCCCGGCGAATGGCTCGACTGCGACCTGATCGCCAGCTCCGGCGGCTACAGCCCGGTGGTGCACCTGGCCTCGCACC TGGGCGGCAAGCCGGTGTGGCGCGAAGACATCCTCGGTTTCGTGCCCGGTGAAGCGCCGCAGAAACGTGTGTGCGTCGGTGGCATCAACGGCGTCTACAG CCTCGGCGATACCCTGGCCGACGGTTTCGAAGGCGGTGTGCGCGCTGCCAGCGAAGCCGGTTTCCAGAGCGTCGAGGGCGTTCTGCCCAAGGCCCTGGCC CGTCTTGAAGAACCGACCCTGGCGCTGTTCCAGGTGCCCCACGAAAAAGGCACGGCGCGTGCGCCGAAGCAATTCGTCGACCTGCAGAACGACGTCACTG CGGCCGCCATCGAACTGGCGACCCGCGAGGGCTTCGAGTCGGTGGAACACGTCAAGCGCTACACCGCCCTGGGCTTCGGCACCGACCAGGGCAAGCTGGG CAACGTCAACGGCCTGGCCATTGCCGCCCGTTCGCTGAACGTCAGCATTCCGCAGATGGGCACCACCATGTTCCGTCCGAACTACACGCCGATCACCTTC GGCGCCGTGGCTGGCCGGCACTGCGGGCACATCTTCGAGCCGGTGCGCTTCACCGCGCTGCATGCCTGGCATGTGAAGAATGGCGCCGAGTTCGAAGACG TCGGCCAGTGGAAACGCCCCTGGTACTTCCCGAAAAACGGCGAAGACCTGCATGCCGCGGTCAAGCGTGAATGCCAGGCCGTGCGCGACAGCGTCGGCCT GCTGGACGCCTCGACCCTGGGCAAGATCGACATCCAGGGCCCCGATGCCCGGGAGTTCCTCAACCGCATCTACACCAACGCCTGGACCAAGCTCGACGTG GGCAAGGCCCGCTACGGCCTGATGTGCAAGGAAGACGGCATGGTCTTCGACGACGGCGTCACTGCCTGTCTGGCCGACAACCACTTCCTGATGACCACCA CCACCGGCGGCGCGGCCCGCGTGCTGCAGTGGCTGGAGATCTACCAGCAGACCGAATGGCCGGACCTCAAGGTGTACTTCACCTCGGTCACCGACCACTG GGCCACCATGACCCTGTCCGGGCCCAACAGCCGCAAGCTGCTGAGCGAAGTCACCGACATCGACCTGGACAAGGACGGCTTCCCGTTCATGACCTGGAAG GAAGGCCTGGTGGGTGGCGTACCGGCGCGGGTGTTCCGTATCTCGTTCACCGGCGAGCTGTCCTACGAGGTCAACGTCCAGGCCGACTACGCCATGGGCG TGCTGGAGCAGATCGTCGAGGCCGGCAAGAAGTACAACCTGACCCCCTATGGCACCGAGACCATGCACGTGCTGCGGGCCGAGAAGGGCTTCATCATCGT CGGCCAGGACACCGACGGTTCCATGACCCCGGACGACCTGAACATGGGCTGGTGCGTGGGCCGGACCAAGCCGTTCTCGTGGATCGGCTGGCGCGGCATG AACCGTGAAGACTGCGTGCGCGAGCAGCGCAAGCAACTGGTGGGCCTCAAGCCGATCGACCCGACCCAGTGGCTGCCGGAAGGTGCGCAATTGGTGTTCA ACCCCAAGCAGGCGATCCCGATGAGCATGGTGGGCCACGTGACCTCCAGCTATGCCCACAACTCCCTGGGTTATTCCTTTGCCCTGGGCGTGGTCAAGGG GGGGCTCAAGCGCCTGGGCGAGCGGGTCTTCGCACCGCTGGCCGATGGCCGGGTGATCGAGGCGGAAATCGTTTCCTCGGTGTTCTTCGACCCCAAAGGC GACCGCCAGAACATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCACAACACGCTCCTACAGGGTGTTATCAACAGAATTCAGGACAGGTGCTCTATGACCGCAGTCAACGTTTACCAACAGCGCCCCACCACCGGGGCCAA GGCCGAGTCGTCGTTGCACCACGCCGACCTGCCGAGCCTGGTGGGCAAGGGCCGCAAGAACGCCGGGGTGACCCTGCGCGAGAAAAAACTCCTCGGCCAC CTGACGATCCGTGGCGACGGCCACGATCCGGCCTTCGCCGCCGGCGTGCACAAGGCCCTGGGCATCGAACTGCCGGGCGCCCTGAGCGTAGTGGTCAAGG GCGAGACCAGCCTGCAATGGCTGGGCCCGGATGAGTGGCTGCTGATCGTGCCCAGCGGCGAAGAGTTCGCCGCCGAGCAGAACCTGCGGGCCGCCCTGGG CGACCTGCATATCCAGATCGTCAACGTCAGCGGCGGCCAGCAGATTCTCGAATTGTCCGGGCCCAACGTGCGCCAGGTGCTGATGAAGTCCACCAGCTAC
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| Amino Acid Sequence |
>sarcosine oxidase subunit alpha
MSQTNRLSNGGRIDRNKVLTFTFNGQSYKGFEGDTLASALLANGVDIIGRSFKYSRPRGIFAAGCEEPNAVLQIGATEATQIPNVRATQQALYQGLVATS TNGWPSVNNDMMGILGKVGGKLMPPGFYYKTFMYPQSFWMTYEKYIRKAAGLGRSPTENDPDTYDNMNQHCDVLIVGAGPAGLAAALAAARSGARVILAD EQEEFGGTLLDSRESLDGKPAAEWVASVVAELQSLPDVLLLPRATVNGYHDHNFLTIHERLTDHLGDRAPIGQVRQRIHRVRAKRVVLATGAHERPLVYG NNDVPGNMLAGAVSTYVRRYGVAPGKKLVLSTNNDHAYRVALDWLDASLQVVAIADARHNPRGALVEEARAKGIRILTSSAVIEARGSKHVTGARVAAID VKAHKVTSPGEWLDCDLIASSGGYSPVVHLASHLGGKPVWREDILGFVPGEAPQKRVCVGGINGVYSLGDTLADGFEGGVRAASEAGFQSVEGVLPKALA RLEEPTLALFQVPHEKGTARAPKQFVDLQNDVTAAAIELATREGFESVEHVKRYTALGFGTDQGKLGNVNGLAIAARSLNVSIPQMGTTMFRPNYTPITF GAVAGRHCGHIFEPVRFTALHAWHVKNGAEFEDVGQWKRPWYFPKNGEDLHAAVKRECQAVRDSVGLLDASTLGKIDIQGPDAREFLNRIYTNAWTKLDV GKARYGLMCKEDGMVFDDGVTACLADNHFLMTTTTGGAARVLQWLEIYQQTEWPDLKVYFTSVTDHWATMTLSGPNSRKLLSEVTDIDLDKDGFPFMTWK EGLVGGVPARVFRISFTGELSYEVNVQADYAMGVLEQIVEAGKKYNLTPYGTETMHVLRAEKGFIIVGQDTDGSMTPDDLNMGWCVGRTKPFSWIGWRGM NREDCVREQRKQLVGLKPIDPTQWLPEGAQLVFNPKQAIPMSMVGHVTSSYAHNSLGYSFALGVVKGGLKRLGERVFAPLADGRVIEAEIVSSVFFDPKG DRQNI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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