Pseudomonas protegens Pf-5, PFL_5641

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 338 448 7.07E-23
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 275 796 1.6E-60
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 705 795 1.7E-7
Gene3D G3DSA:3.40.190.10 - - - 34 261 8.3E-48
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 436 569 1.7E-18
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 703 796 7.5E-9
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 44 265 1.5E-19
SMART SM00086 pac_2 IPR001610 PAC motif 530 571 58.0
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 46 263 5.0E-22
CDD cd01007 PBP2_BvgS_HisK_like - - 42 262 1.37614E-46
Gene3D G3DSA:3.30.450.20 PAS domain - - 453 568 6.7E-19
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 475 578 1.0E-7
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 665 798 4.3E-30
Pfam PF08448 PAS fold IPR013656 PAS fold-4 333 441 8.2E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 331 445 1.4E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 331 452 3.0E-21
SMART SM00086 pac_2 IPR001610 PAC motif 399 439 1.4
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 672 794 2.23E-18
SMART SM00091 pas_2 IPR000014 PAS domain 326 392 0.036
CDD cd00130 PAS IPR000014 PAS domain 345 436 3.73223E-5
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 708 793 2.53015E-28
Gene3D G3DSA:1.20.5.1930 - - - 569 658 2.0E-12
Gene3D G3DSA:3.40.190.10 - - - 129 224 8.3E-48
CDD cd00130 PAS IPR000014 PAS domain 472 568 3.05077E-4
Pfam PF08447 PAS fold IPR013655 PAS fold-3 479 560 1.8E-12
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 599 665 6.4E-13
Coils Coil Coil - - 571 602 -
SMART SM00091 pas_2 IPR000014 PAS domain 451 524 4.0
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 40 265 5.09E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.