Pseudomonas protegens Pf-5, PFL_5636
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGCTGCAATCGGGTGGCCTGATCAACAGCGCGCTGCTGGCCATGGGGGTGATCGACAAGCCCCTGGAACTGGTGTTCAACCGTACCGGGGTCTACATC TCCATGGTGCACATCCTGTTGCCGTTCATGATCCTGCCGATCTACAGCGTGATGAAAGGCATCTCGCCGACCTACATGCGTGCGGCGATCTCCCTGGGCT GCCATCCGTTCGCCAGCTTCTGGCGGGTGTATTTCCCGCAGACCTACGCCGGGGTCGGCGCTGGTTGCCTGCTGGTGTTCATCCTGGCGATTGGTTACTA CATCACCCCGGCATTGCTGGGCAGCCCGAACGACCAGATGGTCAGCTACTTCGTCGCCTTCTATACCAACACCAGCATCAACTGGGGCATGGCCACGGCC CTGGGCGGCCTGCTGTTGCTGGCGACCATCGTGCTCTATCTGATTTACAGCTGGCTGGTGGGCGCAAGCCGCCTGCGCCTGAGCTAAGGAGAGAATCGAA
|
|
| DNA Sequence for Gene |
>PFL_5636
ATGCTGAGCCCCTACATGTCACCCGTCGAACGGGTCTGGTTCTACAGCTTGCGGATTCTCTGCGGCTTGATCCTGTTGTTCCTGGTGTTGCCGGTGCTGG TGATCATCCCGCTGTCGTTCAACTCCGGCAGTTTCCTGGTGTACCCGCTGCAGGGCTTTTCGCTGCACTGGTACCAGGACTTCTTCGCCTCTGCCGAGTG GATGCGCGCGCTGAAGAACAGCGTCATCGTGGCGCCGGCCGCAACCTTGCTGGCCATGGTCTTCGGCACCCTGGCGGCCATCGGCCTGACCCGCGGTGAT TTCCCCGGCAAGGCGCTGGTGATGGCCCTGGTGATTTCGCCGATGGTGGTACCGGTAGTGATCATCGGTGTGGCCAGCTACCTGTTCTTCGCCCCGCTGG GCATGGGCAACAGTTTCTTTTCGCTGATCATCGTGCATGCGGTGCTCGGCGTGCCTTTCGTGATCATCACCGTGTCGGCAACCCTGCAGGGCTTCAACCA CAACCTGGTGCGGGCCGCGGCCAGTTTGGGTGCCTCGCCGCTGACCACATTCCGCCGGGTGACCTTGCCGTTGATCGCCCCCGGGGTCATCAGTGGCGCG CTGTTCGCCTTCGCCACCTCGTTCGATGAAGTGGTAGTGACCCTGTTCCTCGCCGGCCCGGAGCAGGCCACCCTGCCGCGGCAGATGTTCAGCGGCATCC GCGAGAACCTCAGCCCGACCATCGCCGCTGCGGCCACGTTGCTGATCGCCTTCTCGGTGATCCTGCTGCTGACCCTGGAATGGCTGCGCGGGCGCAGCGA GAAACTGCGCACGGCTCAGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCCTCGGGCGGCCTTGTACTAAGGTCTGGGCCGCCCCGTCCCCTCTGCTTGTCGTTCACCCGTAAACTGCGCGCTTCCCATGCTTACTGTGGAGTCGC GGGTGAACTTCAACGATGCCAGTTTCGAAGAGCTGCTCAATGCGCTGCATGACGGCGTCTACATCACCGATGGCCAGGGCCAGACCCTCAAGGTCAACCA GGCCTACGAGCGCCTCACCGGCCTGAACGGCGCCGAGCTGCTGGGGCGGCCGATGCAGGAGCTGGTGAAGAGCGGGGTGATTTCCCAGTCCGCTTCACTA CGGGTACTGCAGGACGGTCGGCCGGTGTCGGTGATGCAGAGCCTCAGCCACGGCAAGAAGTTGCTGGTCAGTGCCACGCCGATCCTCGCCGCCGACCAGA GCATTCGCTATGTGGTCAGCACCGTGCGCGACATGACCGAGCTGCTGCGCATCAAGCGCGAGCGCGACGAGTTGCAGCAGCTCAAGCAGCTGCGCACCAG
|
|
| Amino Acid Sequence |
>polyamine ABC transporter permease
MLSPYMSPVERVWFYSLRILCGLILLFLVLPVLVIIPLSFNSGSFLVYPLQGFSLHWYQDFFASAEWMRALKNSVIVAPAATLLAMVFGTLAAIGLTRGD FPGKALVMALVISPMVVPVVIIGVASYLFFAPLGMGNSFFSLIIVHAVLGVPFVIITVSATLQGFNHNLVRAAASLGASPLTTFRRVTLPLIAPGVISGA LFAFATSFDEVVVTLFLAGPEQATLPRQMFSGIRENLSPTIAAAATLLIAFSVILLLTLEWLRGRSEKLRTAQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|