Pseudomonas protegens Pf-5, PFL_5449

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02071
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0042834 peptidoglycan binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.70.1070
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.40.10 - IPR036908 RlpA-like domain superfamily 99 193 2.3E-37
NCBIfam TIGR00413 JCVI: septal ring lytic transglycosylase RlpA family protein IPR012997 Rare lipoprotein A 102 193 2.0E-43
Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. IPR034718 Endolytic peptidoglycan transglycosylase RlpA 35 192 24.864357
Gene3D G3DSA:3.30.70.1070 Sporulation related repeat IPR036680 Sporulation-like domain superfamily 250 330 8.5E-13
FunFam G3DSA:2.40.40.10:FF:000003 Endolytic peptidoglycan transglycosylase RlpA - - 99 192 1.9E-45
PANTHER PTHR34183 - - - 12 322 3.1E-78
Pfam PF05036 SPOR domain IPR007730 Sporulation-like domain 257 328 4.7E-14
CDD cd22268 DPBB_RlpA-like - - 101 190 4.27955E-54
SUPERFAMILY SSF110997 Sporulation related repeat IPR036680 Sporulation-like domain superfamily 256 328 7.85E-13
SUPERFAMILY SSF50685 Barwin-like endoglucanases IPR036908 RlpA-like domain superfamily 96 189 1.46E-10
Pfam PF03330 Lytic transglycolase IPR009009 RlpA-like protein, double-psi beta-barrel domain 100 189 4.4E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.