Pseudomonas protegens Pf-5, PFL_5374 (hasF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAGGACCTGCGCAATCGCCTGGCCTCCGCCCAGTTCGAACTGGCCAACAGCCAGGTGCGCGCCCCGGCCGCCGGGGTGGTGGTGGGGCTGGAGGTCTACA CCGAAGGTGGGGTGATCAAGCCGGGCCAGCCGCTGATGGACATCGTGCCCCAGGACGAGCCGTTGCTGGTGGAGGCGCGGGTGCCGGTGCAACTGGTGGA CAAGGTGCACCCGGGGCTGCCAGTGGAGCTGATGTTCTCGGCCTTCAACCAGAGCACCACGCCCAGGGTGCCGGGGGAGGTGACCCTGGTGTCCGCCGAC CGGCAGGTGGATGAGCGCACCGAGGAGCCTTACTACACCCTGCGGGCCACGGTCAGCGCCCAGGGCATGCAGCAGTTGCAGGGCTTGCAGATCCGCCCGG GCATGCCGGTGGAAGCCTTTGTCCGTACCGGCGAACGCTCGATGCTCAATTACCTGTTCAAGCCCCTGCTGGATCGGACTCACATGGCGTTGGTGGAAGA
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| DNA Sequence for Gene |
>PFL_5374
|hasF
ATGATTCGAGCCTGGTGCTACTACCTGCCCCTGCTGTGCCTGTTGGGCAGCCCGTCGGTCCAGGCCCTGGGGTTGCTGGACGCCTATGACCTGGCCTTGC GCAATGACCCGACCTTCCAGGCAGCGATCAAGGAACGCGATGCCGGGGAAGAGAACCGGGCCATCGGCCGTGCCGGGCTGCTGCCGAACCTGTCCTGGAG CTACAACAATTCGCGCAACCAGTCCGAAGTGACCCAGGAGACCGTTCGCGGTGATGTCACCAATGACCGGGACTACCGCAGCTACGCCTCGACCCTGACC CTGCAGCAGCCGCTGCTGGACTACGAAGCCTATGCACGCTACCGCCAGGGCTCGGCCCAGGCGCTGTTTTCCGATGAGCGCTTTCGTGGCAAGAGCCAGG AACTGGCGGTACGCCTGCTCAGTGCCTACAGCCAGGCGCTGCTGGCCCAGGAGCGTATCGAACTGAGCCGGGCGCAGAAGCGTGCCTACGCCGAACGCTT GCAGCTCAACGAACGCCTGCTCAAGGGCGGCGAGGGCACCCGCACCGATGTGCTGGAGACCCAGGCCCGGCTGAGCCTGGCCCTGGCGCAGGAGATCGAG GCCCAGGACCAGCAGGATGCCGCTCTGCGCGAGCTGCAAGCCATAGTCGGCGAACCGTTGCAGATCGACGAACTGGATCCGCTGACCCGGCAGTTCCAGA TCCAGCCGCTGCTGCCCAACCGCTTCGACAGCTGGCGTGACCTGGCCATGGCCAACAACCCGGACCTGGCGTCCCAGCAGCAGGCGCTGCGAGTGGCGGA GTACGAAGTGGAGCGCAAGCGCGCCGGGCACCTGCCCAAGGTGAGTTTATATGCCAGCAGCCGTCAGACCAGTTCCGATTCGGAAAGCTCCTACAACCAG AAGTACGACACCAATACCGTGGGCATCCAGGTCAGCCTGCCGCTGTTTGCCGGTGGCTCGGTATCGGCCTCGACCCGCCAGGCGGCCAGCCAGCTGTCCC AGGCCCAGTTCGAACTGGATGCCAAGACCGCCACCACCCTCAACGAACTGCGCAAGCAGTTCAACCTCAACACCAGCGCCGCGGCCAAGGTCCGGGCCTA TGAAATGGCCGTCAGCTCCGCCGAGGCCCTGGTGACCGCGACCCAGAAGAGCGTGCACGGCGGCGAGCGGGTCAACCTGGATGTACTGGACGCCGAGCAA CAACTGTTCACCGCCCGCCGCGACCTGGCGGATGCCCGGCATGCCTACCTGTTGGCGCGGATCCAGCTCAAGTACTACGCCGGCCTGCTCAACGAACAGG ACCTGCAGCAACTGGCCGGCTACTTTCGTCCTCTCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTTGTAGCCGCTGCCGCAGGCTGCGACCGGGGCGCCGCCCCGCACACCCGGCGACGCAGACGTGCCTGATGCGCCGCGGTGTCAGGTTTGCGCCTGCTT CGCAGTCGATCGCAGCCTGCGGCAGCGGCTACAGGAAACGGTAGGGGATCGGCGGCCCAGAATGACAACGGCCGTCTCGAGGACGGCCGTTGGGGAGCGG GGCCAATCAGCGGCGGGTCAGCAGGACCCCGGATTCCATATGGTGGGTCCAGGGGAACTGGTCGAACAGCGCACAACGGGTGATGCGGTGGGTGTCGTGC AACTGGGCGATGTTGGCCGCCAGGGTTTCCGGGTTGCAGGAGATGTACAGGATGTTGTCGAAGCGCCGGGTCAGTTCGCAGGTGTCCGGGTCCATGCCGG CCCGGGGCGGGTCGACGAACACGCTGCCGAATTCGTAGCTCTTGAGGTCCACGCCCTGCAGGCGGCGGAACGGACGAACTTCGTTCAAGGCTTCAGTCAG
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| Amino Acid Sequence |
>type 1 secretion system outer membrane protein HasF
MIRAWCYYLPLLCLLGSPSVQALGLLDAYDLALRNDPTFQAAIKERDAGEENRAIGRAGLLPNLSWSYNNSRNQSEVTQETVRGDVTNDRDYRSYASTLT LQQPLLDYEAYARYRQGSAQALFSDERFRGKSQELAVRLLSAYSQALLAQERIELSRAQKRAYAERLQLNERLLKGGEGTRTDVLETQARLSLALAQEIE AQDQQDAALRELQAIVGEPLQIDELDPLTRQFQIQPLLPNRFDSWRDLAMANNPDLASQQQALRVAEYEVERKRAGHLPKVSLYASSRQTSSDSESSYNQ KYDTNTVGIQVSLPLFAGGSVSASTRQAASQLSQAQFELDAKTATTLNELRKQFNLNTSAAAKVRAYEMAVSSAEALVTATQKSVHGGERVNLDVLDAEQ QLFTARRDLADARHAYLLARIQLKYYAGLLNEQDLQQLAGYFRPLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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