Pseudomonas protegens Pf-5, PFL_5358 (katB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CACTGCCGGCGTATCGCCCGCAGCCGCCTTGAGCGTGACCGCCAGATCCCCGAAGTTCACCCCACCGATCAGCAGGCCGATTGGCGGCATGACCACGTCG CCAACAAAGGACGAGACGATCTTGCCGAACGCGGCGCCGATGATGATACCGACGGCCATATCGACCACATTACCTTTGACCGCGAAGGCCTTGAATTCAC TTAGCACGCCCATAGGTTATTCCTTGCTACAGATGAGGTTGGTTACGGCAGTGTAATTCAGCAAAAAGCATTTTGCCGAAACAACTTTTTACAGCTCGCG GGGTTATCGACCGATAAAGAGGCAAATAGTTTATTCAAAGTGCCATCAAATCGCGCGCGATATACCCCGCGCCCCACGATATAACCAGTACATTCTGTCA ATCGAGCGGTTACGGCCTTTCTATTTATCTTTCAAATATTTAGTCACTAGCCTCTAGCAGGCGCATCGAGATGCGCCTTATATAACTAGAGGAATACAAC
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| DNA Sequence for Gene |
>PFL_5358
|katB
ATGACCGCTTCTCTTGGCCTTGGGAGTCTTTCCCAGCGACGCGTACTGGGCGTGCTTGCCGCCAGTATGCTTTCCCTTTCCGTACAGGCCGCCACGCTGA CCCGCGACAACGGTGCGGCAGTGGGCGACAACCAGAATTCGCAGACTGCGGGCGCCACCGGCCCGGTGCTGTTGCAAGACGTGCAGTTGATTCAGAAACT CCAGCGGTTCGACCGCGAGCGCATTCCAGAGCGTGTGGTGCATGCCCGTGGCACGGGTGCCCACGGTACTTTCACGGTAACCGACAACCTCACGGACCTG ACCCGTGCCAAGGTGTTTGCCGCCGGCGAAGTGACCCCGGTATTCGTGCGTTTCTCGGCGGTGGTGCATGGCAACCACTCCCCGGAAACCTTGCGCGATC CACGGGGCTTCGCCACCAAGTTCTATACCGAGGACGGTAACTGGGACCTGGTGGGCAACAACTTCCCGACCTTCTTCATTCGTGATGCCATCAAGTTCCC GGACATGGTGCATGCGTTCAAACCCGACCCGCGCACCAATCTCGACGATGACTCGCGGCGTTTCGACTTCTTCTCCCATGTTCCAGAAGCCACTCGTACT CTGACCGAGCTGTATTCCAACTCCGGCACTCCGGCCAGTTACCGGGAAATGGACGGTAATGGTGTGCATGCCTACAAGTTGATCAACGCCAAGGGCGAAG TGCACTACGTGAAGTTCCACTGGAAGAGCCTGCAGGGTCTGAAGAATCTCGACCCGAAACAAGTGGTGGAGGTACAGGGGCGCGATTACAGTCATATGAC TAATGACTTGGTAACCCACATTAATAAAGGGGACTTTCCCAAGTGGGACTTGTATGTCCAGGTATTGAAACCCGAAGACCTGGCCAAGTTTGATTTCGAC CCGCTGGACGCTACCAAGATCTGGCCCGGTGTGCCCGAGCGCAAAGTCGGGCAGATGGTGTTGAACCGCAATCCGGCCAACGTCTTCCAGGAAACCGAGC AAGTGGCCATGGCACCGGCCAATCTGGTGCCAGGCATCGAACCGTCGGAAGACCGCCTGCTGCAAGGCCGGGTGTTCTCCTATGCCGATACCCAGATGTA CCGCATCGGCGCCAATGCCCTGCAACTGCCGATCAACGCGCCGAAGAACCCGGTGAACAACGGCAACCAGGACGGCGCGATGAACCTGGGCCACAGCAGC ACGGGGGTCAACTACCAGCCAAGCCGCCTGATGCCACGCGAAGAGCCGCAGACCGCGCGCTACAGCCAGATGGCGCTGGCGGGCAGCACCCAGCAGGCGA AGATCCAGCGCGAGCAGAACTTCAAGCAGGCCGGTGACCTGTACCGCTCCTTCAGCAAGAAGGAACGCCAGGACCTGATCGACAGCTTCGGCGGCTCCCT GGCCACCACTGATGATGAGAGCAAGCACATCATGCTGTCGTTCCTTTACAAGGCCGACCCGGAATACGGCACTGGGGTGACCAAGGTGGCCAAGGGCGAC CTGGCCCGAGTCAAGGCCCTGGCGGCGAAGTTGAGCGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGAGCGAGCCTTACCCGTCACGCCCGCCCGGGCGTGACGTCTTTTTCCGACAGAGGAGTCGCGCCATGCGTCTTTTTATAGCGCTGCTGTCAGTGGCCT GGTCGTTTGCCGCCTACGCGCAGCCTACGGCCGAAGCAGCGGCCGCCGCCGACCCGGTGGCGGTCAAGGTCCAGCTGGAAAGCTACTATTTCGATGCCGC CCGCCGTGGCGATGTGGAAATGCTCGACACCTTTATCGCGGCCGGCTATTCCCTCGATACCCAGGATGAAAAGGGCTACACCGCGCTGATCCTCGCGGCC TATCACGGCCAGGGCCCGGCGGTGGAGCGCCTGCTGGCCGCTGGGGCCAACGCCTGCGCCCAGGACAAGCGTGGCAACACGGCCTTGATGGGGGCGATCT TCAAGGGCGAGGTGCAGATCGCCCGGCGCCTGCTGGCCGCCGATTGCAGTCCCGACCAGCGCAATGGCGCCGGGCAGACCGCCGCCATGTACGCCGGGTT
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| Amino Acid Sequence |
>catalase KatB
MTASLGLGSLSQRRVLGVLAASMLSLSVQAATLTRDNGAAVGDNQNSQTAGATGPVLLQDVQLIQKLQRFDRERIPERVVHARGTGAHGTFTVTDNLTDL TRAKVFAAGEVTPVFVRFSAVVHGNHSPETLRDPRGFATKFYTEDGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDDDSRRFDFFSHVPEATRT LTELYSNSGTPASYREMDGNGVHAYKLINAKGEVHYVKFHWKSLQGLKNLDPKQVVEVQGRDYSHMTNDLVTHINKGDFPKWDLYVQVLKPEDLAKFDFD PLDATKIWPGVPERKVGQMVLNRNPANVFQETEQVAMAPANLVPGIEPSEDRLLQGRVFSYADTQMYRIGANALQLPINAPKNPVNNGNQDGAMNLGHSS TGVNYQPSRLMPREEPQTARYSQMALAGSTQQAKIQREQNFKQAGDLYRSFSKKERQDLIDSFGGSLATTDDESKHIMLSFLYKADPEYGTGVTKVAKGD LARVKALAAKLSD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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