Pseudomonas protegens Pf-5, PFL_5124
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAGGGGCGCTTCCAGTTCGCGCTGGATCTGGCTGACCTGGGTCTGCGCCAGGCCGCTCAGGCGTTGTTCGATGACCTGTTCGAACTGGGCCTGGGTAC GGTCTTGCACCATCTGCTGGGTCCTGGCCCCGGAGAACAGGGCGTACAGCACCAGGGCTGCAACCACGCTGAGAACGATGGCGCCGGCCAGGGCGGCGAC GGAAAACTGGATCGACTTGAACTTCATAGAGGCTCCGGGCGCAGGAATTTAGGTCTGCCGAGCTGTATCGGCCGCTGCAGCGCTGGCCATTAGCCTTACA CGGAAAAATGACTGTTTCAGGGAGCTTGATGTCGTTCTTGGCAAGCTGTGGGGGTAACCCGGGCGGGATTTGCGGGAGGAATGAATTTTCTCCTGCAAGG CAGATATGTATCTGAAATGCGACCGATTGCTGTTTTTAGATCTGGCGCGGATACATTTCCGCCCTTAGGATACGCGCCACGTTTTCAGGGAGGTTTCATG
|
|
| DNA Sequence for Gene |
>PFL_5124
ATGAAGAAGTCATTGGTCGTATGTGCATTGAGTGCCGCAGTACTGCTCAGCGGTTGTGAAACGGTCAATACCACCAGCGGTGGCGTGGTCGGTGTGGATC GCAAGCAATCCATGTTCAGCATGGTTTCCAGCGCTGAAGTGAACCAGTCCTATGCCCAGTCTTATCAGCAGACTCTGGGTGAAGCCAGCAGCCAGGGCGT ACTGGACAAGACCAGCGCCAACGCCAAGCGCCTGCAGGTCATTGCCAACCGCCTGATTGCCCAGGCGCCGACTTTCCGCCCCGACTGCGCGCAGTGGAAA TGGGAAGTCAACCTGATCAAGAGCGACGAGCTCAACGCCAACTGCGGTCCTGGCGGCAAGATCATTTTCTACTCCGGGCTGATCGAGAAGCTCAAACTCA CCGACGATGAAATCGCCGCGGTCATGGGCCATGAAATTGCCCACGCCCTGCGCGAGCACGGTCGCGAAGCCATGTCCAAGCAGTACGCGGTCGGTGCCGG CAAGCAGATCGCCACCTTGTTCGGCGTTCCGCAGGAAACCGTAGCCCTGGGCGACAACGGGGTGAACCTGCTGATGACCCTGCCCAACAGCCGCGAGAAT GAAAACGAAGCGGACCTGATCGGCCTGGAACTGGCCGCCCGTGCCGGTTACAACCCGAATGCGGCCATCAGCCTGTGGAACAAGATGGGCCAGGCTGCCG GTGGCTCCGCGCCGCCCGAGTTCATGAGCACTCACCCGGCTTCCACCAGCCGTATCGCTTCCTTGCAGGCGGCGATTCCCAAGGTGATGCCGCTGTATCA GGCCGCCAAGAAGTCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCCTTCGCGTCATTGTCGATGACGCTATCGCCGGCACGCCGGCTCCTACGGGTTGCGTAGGGGCCAGCTTGCCGGCGATTTCGTTTATACCCAGCCGCT GATCTGCATGGCCTTGTACACCGCCACCACGGCGAGGATGAAGAAGGCCGACGCCGCCAGGCGACGGATCAGGGTCAGGGGCAGCTTGTCTGCGGCGAAG TTGCCTGCCAGGACCACCGGTACGTTGGCAATCAGCATGCCCAGGGTGGTACCGATGATCACCAGCCACAGATCCGGGTACTGCGCCGCCAGCATGACGG TGGCGACCTGGGTCTTGTCACCGATTTCTGCCAGGAAGAAGGCGATCAGGGTGGTCAGGAAAGGGCCGAACTTGCGTGCGGTATTGGCTTCGTCGTCGTC CATCTTGTCCGGAACCAGGGTCCACAGCGCGGTGGCGGTGAAGCTGGCGGCGAGGATCCAGTGCAGGGTCGAGTCCGAGAAGAAGCTGCCGAACCAGGCG
|
|
| Amino Acid Sequence |
>M48 family peptidase
MKKSLVVCALSAAVLLSGCETVNTTSGGVVGVDRKQSMFSMVSSAEVNQSYAQSYQQTLGEASSQGVLDKTSANAKRLQVIANRLIAQAPTFRPDCAQWK WEVNLIKSDELNANCGPGGKIIFYSGLIEKLKLTDDEIAAVMGHEIAHALREHGREAMSKQYAVGAGKQIATLFGVPQETVALGDNGVNLLMTLPNSREN ENEADLIGLELAARAGYNPNAAISLWNKMGQAAGGSAPPEFMSTHPASTSRIASLQAAIPKVMPLYQAAKKS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|