Pseudomonas protegens Pf-5, PFL_5091
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCATTGAGTCAACAGTCTCTATACACGCCTGCCATTTTGGTAGCTGTGTGATCATATTCATTATTGCAATAGGTCGCGCTACGCTAAGGAGTTCCGAC TTTAAGGTTATGAGTAGCGTGATTTCATGCTGCGCATTGTAACCTGCGAGCCGCTCATCCGCACTTAGGCATGTCACGTATTTAGTCGGCCCGCTGGTTG ACGGGCCTGTTCGGGATTTCAAGTCAGAGGGGCATTGGAATCACGTATGGTAGTCATCCTGATGCCGGTCTGTAGCGCTTCCCGCCTGGCATGGTTTGGG TCAAGGTGCCAGTGTTTCGAGATGCTGCCGATGAACTGTTACCGTGTCGAGAGGCTTGCTCGGGTTTTTGGGTGCTCGTCTCATGGCCTTTGTTTTTTCT CACTGCGTGGGGGGGCGATTGAGCTTGCAGTCCTTCACGGGGCGACTTCTCTTTCTTGCATGAAAAGCCTGGTGCAATTCGATTCTGTAGAGAGTTTTAT
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| DNA Sequence for Gene |
>PFL_5091
ATGAGACCCTTAAAAAGCGTGCTCATCCGCGAAACCTTCCCCGTCGGCCCGCTGCAGTGCAACTGCACCATCATTGGCGACCCGCTGACCAAGAAAGCCA TAGTCGTCGATCCGGGCGGCAACCCCGACCTGATCATGGCGCGCCTGGACGCACTGGGCCTGAAGGTGGTGAGCATCATCCATACCCATGCCCATCTGGA TCACTTCCTGGCCTCCGGGCAGATGAAGGAAAAGACCGGCGCCACCCTGCACTTGCACAAGGACGACCAGTTTCTCTGGGACAACCTTGAGATGCAGTGC AGCATGTTCGGCGTGCCCTACACCCCTGTGCCGTCCCCGGATCGCTGGCTGGGTGATGACGAAGAGCTGGCCTGCGGTTGCGGCGTGGCCTTGCACACTC CAGGGCATACCCCAGGTTCCATGAGCTTTTGGTTTTCCGAGGCTAAGCTTCTGATTGTCGGCGACACGCTGTTCAAGCGCGGGGTCGGACGCACGGATTT GTGGGGTGGCGACCAGGCCACGCTGGTGCGTTCGATCAAGCAGCGTCTCTATACCCTCGACGAAGACGCCACAGTGGTTGCCGGGCACGGCCCAGACACC CGGCTGGGAGATGAGATGCGTCAGAACCCGTTCGTGCGAGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTATTTGCCCGTTGGTTCACGGAATTTTTGCCGTTCTGCGTGTTCCAACGCCGGCAAAGGTCTATTGCCAACGTCCGCTGCACCACAGAATGCAAAATGT AGGAGCTTTCCATGTTCACCTCACGTCGTTTGATTGTTGTCGCTACTGCTGTGGCCTTGTTGTCCGGCTGCGCTTCGCCTAACCCCTATGACAACCAGGG GCAGGCCGACGGCGGCTCGTCTGGCATGAGTAAAACCGCCAAGTACGGTGGGCTGGGAGCCTTGGCCGGTGCGTTGGCTGGTGCTGCCATCGACCACAAC AACCGTGGCAAGGGGGCCCTGATCGGTGCTGCAGTGGTCGGTGCTTCCGCGGCAGGTTATGGCTACTACGCTGACCAGCAGGAGAAAAAACTGCGCGCCA GCATGGCTAACACCGGGGTCGAAGTGCAGCGCCAGGGCGATCAGATCAAGCTGATCATGCCGGGCAATATCACCTTCGCCACTGACTCGGCGAATATCGC
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| Amino Acid Sequence |
>metallo-beta-lactamase domain-containing protein
MRPLKSVLIRETFPVGPLQCNCTIIGDPLTKKAIVVDPGGNPDLIMARLDALGLKVVSIIHTHAHLDHFLASGQMKEKTGATLHLHKDDQFLWDNLEMQC SMFGVPYTPVPSPDRWLGDDEELACGCGVALHTPGHTPGSMSFWFSEAKLLIVGDTLFKRGVGRTDLWGGDQATLVRSIKQRLYTLDEDATVVAGHGPDT RLGDEMRQNPFVRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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