Pseudomonas protegens Pf-5, PFL_4243
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGCGTGCTCGGCCAGCAGGGCCCGTACCAGGGAAGACTTGCCAGTGCCACGCGAACCCCAGAGCAGGGCATGGTTGGCTGGCAGGCCGTCAAGGAACT GCTGGGTGTTGCGCGCCAGTTGCTCACGCTGCTTGTCGACCCCGATCAGGTCGCTCAGGCGCATGTCCAGGCTGACTTCCAGCGGCAGCAGGAAACCGCT GCGCCCTTCACGCTGCCAGCGGGCCGCCAGGCACTGATTCCAGTCGATGGGCTCGCGCAGGGTGGGCAACAAGGGTTCAATCCGCGCCAGAACCGCATCG GCACGTTCAAGAAATGCATTCAATCGAGCATCCACGACTTTTCCTCAGGCACGTTCAAGGTAATGATGCGGCACACAGAGCAAACGCAATCCCGATCAAG GGGTCTATCGCTTTATCAGCTGCTGCCCGGCCAGCCCGGCAACCAAAAATGATCAGCTATGCTTGCGCAGCGAAGGGAAACGAAAGTGGTTCAACCCCCC
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| DNA Sequence for Gene |
>PFL_4243
ATGGATATCAAGTTCACCAACCGCCTGTCCTATAAACAGGCCCGGCTCACCGTGCTGGTGGGTTTCATTCTGGGGACCGCGCTCAGTCTGCTGCAAATCG GCATCGATTATGCCAGCGAAGACGCCTCCATCAATCGTGAAATCCAATCGCTGCTGGAAATCAGCCACAATCCGGCCTCGCGCATCGCCTACAACATCGA CGCCGAGCTGGCCCAGGAATTGACCCTGGGCCTGCTGCGCTCCCCGGCGATCATTCGCGCGCAATTGATCGACAACAACAATACCCTGCTGGCCAACGTC GAACGGCCACCGCAACAGAGCCGCTATCGGGCCATCAGCGACTTCCTGTTCGGCGCCGATCGCCAGTTCGAGGATCGCCTGTATCTGAGCCACCTGCCGG AGGAGTCCCTCGGCACCCTGCACCTGGATGTGGATACCTACGCCTTCGGCAGCCGTTTCCTGCGGCGTGCCGAAGTCACCCTGATCAACGGGTTCGCCCG CAGCCTGATCCTCACCGGGATTCTCCTGGCGCTGTTCTACGTGATGCTGACCAAGCCCCTGGTGCGGGTGATCCGCGAGCTCAGCAGCCGCGACCCGCGC AGCCCGAAACAGGCCAAGCTGGACTTTCCCCATGGCCACGAGAACGACGAAGTCGGGGTGCTGGTCAAGGTGGCCAACCAGCAGTTCGACATCATGGCCA CCGAGATCCAGCAGCGGCGCAACGCCGAGAACCGCCTGACCGAATACCTCGGGCAGCTGGAGAACATCGTCTCGGCCCGCACCACCGAGCTCAAGGCCAG CAATGCCCGGCTCAGCCAGTCCAACGAGGAACTGGAGATCGCCCGGCGCACTGCCCTGGACATGGCCCAGGCGCGGGCGGCGTTTCTGGCCAACATGAGT CACGAGATTCGCACCCCGCTCAATGGCCTGCTGGGGATGATCGCGCTGTCCCTGGACAGCCCGCTGAACCCCGAGCAGCGCCAGCAGCTGTCGATTGCCC ATGACTCCGGCAAGGTCCTGGTGGAATTGCTCAACGATATTCTCGACATGTCCAAGTTCGACGCCGGGCAACTGGAGCTGGAGCGAATTCCCTTCGATCT CGGGGTACTGGTGGAGGACACCGCCAACCTGCTGTCGCAAAACGCCGCGGCCAGCGTGGAGCTGGCCTGCCTGATCGCCCCGGACTTCCCCGCCCTGGTA CTGGGGGACCCGACCCGAGTGCGGCAGATCGTCAGCAACCTGCTGTCCAACGCCCTCAAGTTCACCCGTTTCGGCCGCGTCGATGTGCGCCTGAGCACCC TGGGCGACGGAGTGCGCATCGAGATCTGCGACACCGGCATCGGCATCGCCCAGGAAGCCCAGGTGCGCATCTTCCAGCCCTATACCCAGGCCGGCGCCGG CATCACTCGCCAATACGGAGGCACCGGCCTGGGCCTGGCCCTGACCTACAACCTCTGCGAAGCCATGGACGGCCGCCTGAGCATCAGTTCGGAAGTCGGC TTCGGCAGCCAGTTCTGCGCCGACCTGCCGCTGCCCTGCCACACTCCGGCCGCCCCGCCGCCGGCGCTGGCCGGGAAGATCATCGCCATCACCGAGGCCG GCAGCGGCCTCGCCGAGCTGCTGGCCAGCCTGCTGCCCAGTTGGGGCCTGAGCTATCAGCGCTGTGATATCGAGGATTCCCTGGCCGGCCTCGACCCCGA CCTGCTGATCACCGACTGCCCGGAATGCCTGTTCGGCCTGCGCCCGGCGATCCGCGCGCCAATCCTGCTGGTGACCGCCTATGGCAGCTTCCTGCCCAGC GAAGAGGCCAACGCCCTGGCACCGCTGCAACAGCAGGCCCGGCCCCTGGCGCGCAATGCGTTGTATCAGACCCTGCGACGCTCGTTGCTGGGGGAAACCA TCACCCTCAACGACGCCCAGCTGGAAATGCCGGTGCAGCGGCGCCGGGCGGACATTCTGCTGGTGGAGGACAACCCGGTGAACCAACTGGTGGCCAAGGG CATGCTGAGCAAGCTCGGCTGCGCGGTGACCGTGGCCGCCCATGGCGCCGAAGCCCTCAACCAGTTGGAGCTGCATCGTTTCGATCTGGTGCTGATGGAC TGCAACATGCCGGTCATGGATGGCTACGAAGCCAGCCGGCAGATCCGGCGCAGCGGGCGCTGGCCGGATCTGCCGATCATCGCCCTGACTGCCAACGCCA TGCCCGAGGAACGCGAACGCTGCCGCGCCGCCGGCATGAGCGACTACCTGGCCAAACCGTTCCGTCGCGAAGAACTGATCGCCCTGCTCGACCTCTGGGT GCCGACTACGACAAAGCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTGCTGCAGCAGTTGATCCAGGCCCTCGCGCAGCTGATCGAGGTTATCCAGATCGATCCCGCTGTCGCACAGCAACGCCGCCTTCAGCGGCGGCACCTG CTCACGCAGCGCCAGGCCGCGCTCGCTCAAGCTCAAGTGCACCTCGCGCTCGTCGCGCCCGGACCGCTGGCGCTGCACCAGTTGCAACTGCTCCAGACGC TTGAGCAACGGGGTCAGGGTCCCGGAATCCAGGGCCAGGCGCTCGCCCAGGGCCTTGACCGTCGGCAGGGACGGAGGCGTTGCCTGCCATTCCCACAGCA CCAGCATCACCAGGTACTGCGGGTAGGTCAGGCCCAGGCGGTCGAGCATCGGCTTGTAGCCACGGACCACCGCCCGCGAGGCGGCGTACAGCTTGAAGCA CAGCTGGGAATCGAGTTTCAGTGAATCCACGGACAGGTCGTTCATTTGAGCAGGGCTTCGATCTCGCGGCTCAGGTCCTGGGGTTTGGTTGCCGGAGCGA
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| Amino Acid Sequence |
>sensor histidine kinase/response regulator
MDIKFTNRLSYKQARLTVLVGFILGTALSLLQIGIDYASEDASINREIQSLLEISHNPASRIAYNIDAELAQELTLGLLRSPAIIRAQLIDNNNTLLANV ERPPQQSRYRAISDFLFGADRQFEDRLYLSHLPEESLGTLHLDVDTYAFGSRFLRRAEVTLINGFARSLILTGILLALFYVMLTKPLVRVIRELSSRDPR SPKQAKLDFPHGHENDEVGVLVKVANQQFDIMATEIQQRRNAENRLTEYLGQLENIVSARTTELKASNARLSQSNEELEIARRTALDMAQARAAFLANMS HEIRTPLNGLLGMIALSLDSPLNPEQRQQLSIAHDSGKVLVELLNDILDMSKFDAGQLELERIPFDLGVLVEDTANLLSQNAAASVELACLIAPDFPALV LGDPTRVRQIVSNLLSNALKFTRFGRVDVRLSTLGDGVRIEICDTGIGIAQEAQVRIFQPYTQAGAGITRQYGGTGLGLALTYNLCEAMDGRLSISSEVG FGSQFCADLPLPCHTPAAPPPALAGKIIAITEAGSGLAELLASLLPSWGLSYQRCDIEDSLAGLDPDLLITDCPECLFGLRPAIRAPILLVTAYGSFLPS EEANALAPLQQQARPLARNALYQTLRRSLLGETITLNDAQLEMPVQRRRADILLVEDNPVNQLVAKGMLSKLGCAVTVAAHGAEALNQLELHRFDLVLMD CNMPVMDGYEASRQIRRSGRWPDLPIIALTANAMPEERERCRAAGMSDYLAKPFRREELIALLDLWVPTTTKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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