Pseudomonas protegens Pf-5, PFL_4169

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
GATGTCGACAGCCGCTTTGCCCAGGCGATCGCCGCGGGCGGCACCGAAGTGTCGGCGGTCAAGGACCAGTTCTACGGCGATCGCAGCGGCAGCCTGCGCG ACCCTTTCGGGCATGTGTGGTTCCTCGCCAGCCGCAAGGAGGAACTGAGCGCCGAGGAAATCGGCCGACGGGCCCGGGAAATGTTCCAGCAACAGGCCGG CTGAGCCAGCCCCTGTAGGAGCCGGCTTGCCGGCGAAGGCGTCTCGCGGACCCGTTCGCGGGCAAGCCCGCTCCTACGGGGCCTTGGGCATTGGCCAAAC CAGTCAAGCAGCGGCTTTCACGAGGGTTTCGCAGCTTCGTAACATTTACTTTCATATCGCCTTTCGGGATTTACGATTCTCATTCGTCTTAATTAGATGC AGCAGGCCGCGTTGGCCCAGGCTATGCCCGGCGCTTTTTGTCCCGGGCCCGGTCCCGGGTTCCAGTGCCGCTCCATTCCTCGAATCAAGACGCCCATTCA
DNA Sequence for Gene
>PFL_4169
ATGTCGAAGAAGTCCCGTTCAAAAATCTGGTTTCTGGTGCACAGCTGGCTGGCCCTGCCCATCTGGTTCTTTGTGCTGATTGTCTGCGTCACCGGCACCC TGGCGGTGGTCAGCCAGGAGATCGTGTGGCTGGCCAACCCCGACGTGCGCGCCAGCAAGCCCAGCGATGACGCACAACCGCTGAATTACGACCAGATCGT CCAGGCCATCAAGCGCGCCGAACCCCAGACCCGGGTGGATACCATCGTCACCCCGGATGAAAGCCACTTCGCCCTGAGTGTCAGTGTCAGCTACCCGGAC GGCCGCTCGCCGACGCTCTACGTCAACCCCTACACCGGGGTGATCCAGGGCACTAGCCCGCAGTTCGATTTCCAGGGCTTCACCCGCGCCCTGCACGGCT GGTGGCTGGTGCCCTTCACCAACGGCTACAGCTGGGGCTGGTACCTGGTGTCCTTGCTGGGCCTGCCCATGCTGGTGTCGCTGATCACCGGGCTGGTGGT CTACAAGAAGTTCTGGAAAGGCTTTCTCAAGCCGACCCTGCGCCTGCGCCACGGTGCACGGATCTTCTGGGGTGATTTCCATCGCCTGAGCGGCATCTGG TCGATCTGGTTCATCGCGGTGATCTCCATCACCGGCACCTGGTTCATGATCGAAGCGATTCTTTCGGACAACCACATTAGTATCTCCAGCGAACCCGTGG TCCCGGTGATCGCTCGCGAACAAGTGCCGACCACGGGCGATGGCAGCCCGGCGCCGATGATCGGCCTGGACCAGGCCATCGGCATTGCCACACAGAAAAT CCCCGGCTTCGACATCAGCTTCGTCAGCCTGCCGAGCAACGCCTACAGCCACCTGTATGTCGGCGGCCGCGGCTGGTATCCGCTGATGTACCAGACGGCC AACATCAACCCCTATACCGGCTCCCTGGACACCTCGCACCTGCTGGCGGACCGCAACACCCTGGAGTTCGTCACCGAATCCATGCGCCCGTTGCACACCG GTGATTTCGGCGGCCTCTGGATCAAGCTGATCTGGTTCTTCTTCGGCCTGGTGCTGAGCATGATGGTCCTCAGCGGCCTGCTGATCTGGACCAAACGCAC CGCCCTGGCCACCGCCAACGCCCTCAAGCGCGAAGAAAAGGCCGCCCGTGCGCGCCCCGCCAGCAAACCCGCCCAGGCACCCGCCCCGGCCATGCGCGCC GAAACCTCGGAGAGCACCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCAGACCAGCACCGCCGCCGCGCCTTCGAACCTGAGCCGGCTCTGGCACAAGTGGCGCTTTCACCTGAACATCCTGCTGTTGCTGATTCCCCTGGGCTT CATGCCCAAATACTTCGCCGACGTTGCCCTGTTTCGCGGCGAAAGCGGCCTGGGTGAACGGGAGATCGGCGAAATCCAGGTCGGCCCCTGGAGCCTGCGC CTGGCGGAAATGCGCAACGAAGCGCCACGCAGCGATGGCCCCGCCGGTTACCTGAAAAGCTTCAACGCCGCCCTGTGCCAGGCCTGCATCGAGCCGGTCA AAGCCACCTACCTGCGCATCGGCAAGCCCCGCAGCCTGCGGGCCGCCGGGGTGATTTTCTTCGGCAGCCCGTACCGCATGGGCGCCAGCCTGCCCATCCC GGAAAAGACCAAGGCCGATTCCGAGCTGTGGATCACCATGGAAGGCTGGGACGGCAGCATGCACCAGGCATCCATTCCCCTGAGCCAGGCGTCACCCGCC
Amino Acid Sequence
>PepSY-associated TM helix domain-containing protein
MSKKSRSKIWFLVHSWLALPIWFFVLIVCVTGTLAVVSQEIVWLANPDVRASKPSDDAQPLNYDQIVQAIKRAEPQTRVDTIVTPDESHFALSVSVSYPD GRSPTLYVNPYTGVIQGTSPQFDFQGFTRALHGWWLVPFTNGYSWGWYLVSLLGLPMLVSLITGLVVYKKFWKGFLKPTLRLRHGARIFWGDFHRLSGIW SIWFIAVISITGTWFMIEAILSDNHISISSEPVVPVIAREQVPTTGDGSPAPMIGLDQAIGIATQKIPGFDISFVSLPSNAYSHLYVGGRGWYPLMYQTA NINPYTGSLDTSHLLADRNTLEFVTESMRPLHTGDFGGLWIKLIWFFFGLVLSMMVLSGLLIWTKRTALATANALKREEKAARARPASKPAQAPAPAMRA ETSESTL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site