Pseudomonas protegens Pf-5, PFL_4127

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02321	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0015562	efflux transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02321	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF56954	Outer membrane efflux proteins (OEP)	-	-	7	465	1.57E-83
PANTHER	PTHR30203	OUTER MEMBRANE CATION EFFLUX PROTEIN	-	-	13	466	4.4E-66
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	281	454	6.5E-19
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	57	251	2.2E-13
Gene3D	G3DSA:2.20.200.10	Outer membrane efflux proteins (OEP)	-	-	93	348	1.1E-93
NCBIfam	TIGR01845	JCVI: efflux transporter outer membrane subunit	IPR010131	RND efflux system, outer membrane lipoprotein, NodT	10	463	1.6E-69
Gene3D	G3DSA:1.20.1600.10	Outer membrane efflux proteins (OEP)	-	-	48	463	1.1E-93
Coils	Coil	Coil	-	-	380	400	-
Coils	Coil	Coil	-	-	61	81	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.