Pseudomonas protegens Pf-5, PFL_4018
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTGCCGGCGGTGCGCAGAGTGCGGTTCATTAGGTGTCCTGATGATCCTTGAGTACCTGGCCGCTCACGGCGTCCAGTTCCAGGTCCCATTCCAGCCCC TGCGGGTCGCGCAGTTCAACCTGGTAGATGTACTTGCCGTACTCTTCTTCCAACTCGGTTTCACTGATGCTCGCCCCAGGATGCCGGGACAGGGCCGTGG CATTGAGTTTTTCAAAGGACACAATGGTACCAGCGTCGCGCAGTCTCAGGGCTTCGTCCGGCCCCAGGTCGCGGGCGTGGGCCAGGCTGGCGGTCAGGGC GACAAGGCTGGCGCCGAACAGCGCGGCAAGGGTCTTCATGGCAGTTCTCCAAAGTCGGTGGCCAAAGGCCGATGCCGCAGACCATACCCAAGGCAACTTA ATTGAAACTGAATGGCCAGCATGGGCCTGACACAGGTTTCACTCGGCCCGCGGCCCCAGGTGTCTCTATACTCGGCGGCTGATTCAAGAGTGAGCCCGGT
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| DNA Sequence for Gene |
>PFL_4018
ATGACCGCCATCCATATCAAGTTTCCCGCCCTGACCCTCAAGGCCGGCCCCCGCGCCCTGGCCCGCATCCGCCAGCAAGGCCTGCACCCCCGTGAAGTCG GCACCTTGCCCGGCGCCGCCGGCGGCCCCAAGGCCCTGGGCATCCAGGGCCTGGACCTGGCGCTGTTCGGTGAATGGCTGCCATCGGCGCCCCGGGACCG CTCGCTGATCGGCGCCTCGGTGGGTTCCTGGCGCTTCGCCAGCGCCTGCCTGCCGGACGCCGCCGAAGGCATCCGCCGCCTCGGCCAGTTGTACAACGCC CAGAGCTTTGCCAAGGGCGTGACCATGGCGCAGATCAGCCAGAGCTCCCGGCGCATGCTCGAGGACCTGCTGGAGGGCCGCGACGCTTCGATCCTCGACA ACCCTCACTACCGGCTGAACATCATGGTGGTCAAAAGCCACGGCCTGCTCGCCGACGACCATCGCGGGCGCCTCGGCCTGGGGCTGTCCTCGGTGATCGC CGACAACCTGCGGGGCCGCGCGCGCCTGGCCCGGCACTTCGAGCGCCTGGTGCTGCACGACCCGCGCCTGGCCCCGCCCTTGCACACCCTGGAAGACTTC CCTTCGCGCTTCGTGCCCCTGGACCGCGGCAACCTGCGCCAGGCGCTGCTGGCCTCGGGCTCGATCCCCATGGTCATGCAGGGCGTGCGCGATCTGCCCG GCGCCGGAGCCGGCACCTTCCGCGACGGCGGCCTGCTGGACTACCACCTGGACCTGCCCTACAGCGGCAGCGACATCGTGCTCTACCCGCACTTCACCGA CTGGGTGATCCCCGGCTGGTTCGACAAGACCCTGCCCTGGCGCCGGGCCAGCCCGGAGCGCCTGCGGGACGTCTTGCTGCTGGCGCCATCGAAGGAATAC CTGGCGCGCCTGCCCTACGGCAAGCTGCCGGACCGCAACGACTTCAAGCGCTTCATGGGCGATGACGCCAGCCGGCAAAAATACTGGCGCAGCGCCATGG ACGAAAGCCGGCGCCTGGGCGACGAATTCCTCGAACTGGCGGCGCAGAATCGCCTGGGCGAACGCCTGCAAAGCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTGCCCCAGGCCGCGCACTGACCCTTTAGTCAGGGTTTTTCCGCAAGCGCCGGGGCAAGCTGATAAACTCGCCGCCTGCCTCAACTCGCCCCCGGGCG ATAGCCATCTGACAGAGCTGACCGACACTGTGGAAATCTTCAAAGAATTTACCTTCGAATCCGCCCACCGCCTGCCTTTCGTGCCCGAGGGCCACAAGTG CGGCCGCCTCCATGGCCACTCGTTCAAGGTGGCGATCCACCTCAGTGGCGAGGTCGACGCACACACCGGCTGGATCCGCGACTTCTCGGAAATCAAGGCG ATCTTCAAGCCGCTGTACGAGCGCCTGGACCACAACTACCTGAACGACATTCCCGGCCTGGAAAACCCCACCAGCGAAGTCCTGGCCAAATGGATCTGGA ATGAGCTCAAGCCCCTGCTGCCGGAGCTGAGTGCGATCCGCATCCACGAAACCTGCACCAGCGGCTGCATCTACCGCGGCGAATAAGCCCACCGAAGAAA
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| Amino Acid Sequence |
>hypothetical protein
MTAIHIKFPALTLKAGPRALARIRQQGLHPREVGTLPGAAGGPKALGIQGLDLALFGEWLPSAPRDRSLIGASVGSWRFASACLPDAAEGIRRLGQLYNA QSFAKGVTMAQISQSSRRMLEDLLEGRDASILDNPHYRLNIMVVKSHGLLADDHRGRLGLGLSSVIADNLRGRARLARHFERLVLHDPRLAPPLHTLEDF PSRFVPLDRGNLRQALLASGSIPMVMQGVRDLPGAGAGTFRDGGLLDYHLDLPYSGSDIVLYPHFTDWVIPGWFDKTLPWRRASPERLRDVLLLAPSKEY LARLPYGKLPDRNDFKRFMGDDASRQKYWRSAMDESRRLGDEFLELAAQNRLGERLQSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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