Pseudomonas protegens Pf-5, PFL_3118 (fapA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
GAGCGACGACGGCCAGCGCTGCCAGCCACAACTGGCAGAACGCATGGCGTTCTTCGAGGCTACCCGCCATTGGCTGGAGCAACACCGCCAGCCGTACCGC ATCATTGGCGGCGACTGGCAAGCCCGCCGGCAACAGGCCTTCGAGCAGGTCCGGCAACTGCTGCAAGCGTGATCGGTGCAGTGCCGCAGGGCCACAAGTG TCCATCCCTGAAACACCTGCCTGGCCATCAGGCCGCCATTTTCCGCGGTGGCGCCCACGGCCGGGCAAACTGTTAAGCCCCTGATACACCCCCGCAGCAA CCCCTGTTCCAGAGCGTTGCCCCGGTTATGGCCAATGGCCGTCGGGGGTACTTGTCTCATCCCTGAAACAGTCCCGAAAGCCGACGCCCCGCAGCGTTCG CAAGCCGTTGAATCTTAAAAACAAACAAAAAGCGGCACGGCTTCTGCTCTCTTCCTCGCAACGCCGGCTAGGGCCAGCACTGAGAAGAAGGAATACCGCC
DNA Sequence for Gene
>PFL_3118 |fapA
GTGGGGACGCTGAATAAAAGTTTCACCCGCCTACTGCTGATCGGCTGCGCCGTCAGCGCGGTGTACAGCCTTCCGGTGATGGCTGCGGGGAATGGCGAAA TCATCATCCAGCGCACCGTCCAGGCGCAGCCCATCGGCCGCGCACCTTTGCAAAAAGATCCCAACCCCGTCGAGGTCAACACCAACCCGTCGGTCCTGGT CAATCAGATGACCAGTAATGAAATGAGCGATGGCGACTTTGCCGGAATCAAGACCGGAGCGCTGGTCCGCGGCACGGTGCTGTCCGGCAGCGCCGGTGTA CCCGGCATGAATGTACTGACCAACAACAACGGCCTGCCCGGCATGTCCGCCGGCCATGGCGGCGGTGCGGGCGCCAGCATCTCCAACTCGATCAACCGCA GCATCAGCTCCGGCATGGCTCCCTTGAGCAACATTGGAGGGCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CATGAGTCGCTCCCTGCTGTTCCTCGCCTTGCTGACCTGCACCGGGGCCATGGCCGACTCGGCCAGCCCAGTCACCGATACCTCGAACATCCAGAACTCC GGCGCAGGCTATACCGGCAACTTCAACGTCAACCAGGCCGCCGGCGACCAACAGCAACAGACCAACGTACGGGCCATTGCCATCGGCACCAACGCCACGG CAACCACCAGCGTGACCCAGAAGATCACCACCGCCGCCAGCCGCGCGGTCAACGCCAGCAGCACCATCGGCGGCAACTCTTTCAGCAAAGGCAACGGCGC ACTGGGCGTGAACCAGTCGGCCGGGGCCAACAACCAGATGGCCAATGCCCTGCGGATCAGCATCAGTGCCAATCCGCAAAGCATTGACGACAGCGCCCTG TCGCAACAGAACGTGGCGCTGTTACCAGACTCAGGAGCAACTGGCACTCAACAAGGCAGCCGCCAGGTCGTTACCAGCGACCAGGCCTTCACCGGCAGCC
Amino Acid Sequence
>FapA
MGTLNKSFTRLLLIGCAVSAVYSLPVMAAGNGEIIIQRTVQAQPIGRAPLQKDPNPVEVNTNPSVLVNQMTSNEMSDGDFAGIKTGALVRGTVLSGSAGV PGMNVLTNNNGLPGMSAGHGGGAGASISNSINRSISSGMAPLSNIGGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site