Pseudomonas protegens Pf-5, PFL_3045 (arnA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTGGCCTGCACCGAGCGCAGCACCTTCATCCCGATCCTGGCCAACAGCTTTGCCCGGCACACCACCGAGGTGCTGGTGGAGCACGCCGAGCGCGAGC ACGGCGACTCCAAGTACAGCCCGATGCGCCTGATCAACCTGATGTTCGACTTGATCACCTGCATGACCACCACGCCCCTGCGGCTGTTGAGCATCATCGG TTTCGGCATGGCCGGCCTCGGCGCGCTGTTTGCCCTGATGCTGATCGTGCTGCGCCTGATCTTCGGCGCCACCTGGGCCGGCGACGGCACCTTCGTGCTG TTCGCGGTGCTGTTCGTGTTCACCGGTGGCCAGTTCATCGGCATGGGTCTTTTGGGTGAATACCTGGGACGCATGTACAGCGACGTGCGGGCCCGCCCGC GTTTCTTCATCGAAAAAGTCTTGCGCAGCCAGCCTGCGGCCCCGGCCCCTGCTGTGACTGTCGACGGTTTAACTTCCACTCATACTGATCAGGTTTCGCC
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| DNA Sequence for Gene |
>PFL_3045
|arnA
ATGAGCAATAAAGCTGTTGTCTTCGCCTACCACGATATTGGCTGTGCTGGCATCGAAGCCCTGCTCAACGCAGGTTACGAGATCGCCGCCGTGTTCACCC ACGCCGATGACCCCAAGGAAAACACCTTCTACGGCTCGGTGGCCCAGCTCTGCGCCCGCAAGGGCATTGCCGTGCATGCCCCGGAAGATGCCAACCACCC GCTGTGGATCGAGCGCATCGCCAAGCTCAACCCCGACTACCTGTTCTCCTTCTATTACCGCAACCTGCTGAGCGAGCCGCTGCTGGCCACTGCCAGCAAG GGCGCGTTCAACCTGCACGGCTCGCTGCTGCCGCGCTACCGTGGCCGCGCACCGGCCAACTGGGTGCTGGTCAAGGGCGAAACCGAAACCGGCGTGACCC TGCACCGCATGGTCAAGCGTGCCGATGCCGGCGCCATCATTGCCCAGGAGCGTGTGGCCATCGAGCGCAGCGACACCGCGCTGAGCCTGCACCACAAACT GCGTGACGCCGCCGCCAGCCTGCTGCGCGACACCCTGCCGGCACTGGCCCAGGGCAAGATCACCGAAACCGCCCAGGACGAGTCCAAGGCCAGCTACTTC GGTCGTCGCACCGCGGCGGACGGCAAGATCGACTGGCAGCGTCCGGCCGAAGAGCTGTTCAACCTGGTGCGCGCCGTGACTCAACCCTACCCGGGCGCCT TCTGCGCCGTGGGCGAGCACAAGCTGATCGTCTGGAGCGCCGAAGTCGCCAAGGGCAACGAAGGCCAGGCCCCGGGCCGGGTCATCAGCGTCGACCCGCT GCGCATCGCCTGTGGCCAGGACTCCCTGGTGATCACCTCCGGCCAGCGCAACGCCAACGGCCTGTTCCTGGGTGGCCCGCAACTGGCCAACGAACTGGGC CTGGTGGACGGTTCCCTGCTGCGCGGCGCCGAATCGGGGCGCAAGCCACGTCGCACCCGCGTACTGATCCTGGGCGTCAACGGCTTTATCGGTAACCACC TGTCCGAGCGCCTGTTGCGTGACGACAAGTACGACGTCTATGGCCTGGACATCGGCTCCGACGCCATCGAGCGCCTGCGCAGCCATCCGAACTTCCACTT CGTCGAAGGCGATATCAGCATTCACTCCGAGTGGATCGAATATCACATCAAGAAGTGCGACGTGGTCCTGCCACTGGTGGCCATCGCCACCCCGATCGAG TACACCCGCAACCCGTTGCGCGTGTTCGAGCTGGACTTCGAAGAGAACCTCAAGCTGGTTCGCTACTGCGTCAAGTACAACAAGCGCGTGATCTTCCCAT CGACTTCGGAAGTCTATGGCATGTGCCAGGACAAGAACTTCGACGAAGACACCTCCAACCTGATCGTCGGCCCGATCAACAAGCAGCGCTGGATCTACTC GGTCTCCAAGCAGCTGCTGGACCGGGTGATCTGGGCCTACGGCGCCAAGGGCCTGAACTTCACCCTGTTCCGTCCCTTCAACTGGATGGGCCCGCGCCTG GACCGCCTGGACTCGGCACGCATCGGCAGCTCCCGGGCCATCACCCAGTTGATCCTCAACCTGGTGGAAGGCACCCCGATCCGTCTGTTCGACGGTGGCG AGCAGAAGCGCTGCTTCACCGACATCGCCGACGGCATCGAAGCCCTGGCACGCATCGTCGACAACGAAAACGACTGCTGCAACGGCCAGATCATCAACAT CGGCAACCCGGACAACGAAGCCAGCATCCGTCAGCTGGGCGAAGAGCTGCTGCGCCAGTTCGAAGCTCACCCGCTGCGCGGCAACTTCCCGCCGTTCGCC GGTTTCCGCGATGTGGAGAGCAAGGCGTTCTACGGTGCCGGCTACCAGGACGTGGAACACCGCAAGCCAAGCATCGACAACGCCAAGCGCCTGCTGAACT GGGAGCCGACCGTGGAAATGAGCGAAACCATCGGCAATACCCTGGACTTCTTCCTGCGTGAAGCGATGCTGGAAATCGCCGACCGCGCCAAGCAAGAAGC ACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCAGGCAGGTCTGCGCATTGATGTCGATACCTACCGCGGCACCCGGGAGGGGGTGCCACGGCTGCTCGAATCGCTGGATGAAGCCGGGGTCAAGGCCAC CTTCTTCTTCAGCGTCGGGCCGGACAACATGGGGCGCCACCTGTGGCGCCTGATCCGTCCGCAGTTCCTCTGGAAAATGCTGCGGTCCAATGCCGCGGGC CTGTACGGCTGGGACATCCTCCTGGCCGGCACGGCCTGGCCGGGTAAACCCATTGGCCGGGACCTGGGGCACTTGATGCGCCAGACCCTGGCCGCCGGTC ATGAAGTCGGCCTGCACGCCTGGGATCACCACGGCTGGCAGGCCAATACCGGGCGCTGGAGCCAGGCACAGCTGATCGAACAGATCCGCCGTGGCGTCGA CAGCCTCAACGATATTCTCGGGCAAGCGGTGAGCTGCTCGGCGTCCGCCGGTTGGCGCGCCGACGAACGCGTCATCGAAGCCAAACAGCAATTCGGCTTT
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| Amino Acid Sequence |
>bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
MSNKAVVFAYHDIGCAGIEALLNAGYEIAAVFTHADDPKENTFYGSVAQLCARKGIAVHAPEDANHPLWIERIAKLNPDYLFSFYYRNLLSEPLLATASK GAFNLHGSLLPRYRGRAPANWVLVKGETETGVTLHRMVKRADAGAIIAQERVAIERSDTALSLHHKLRDAAASLLRDTLPALAQGKITETAQDESKASYF GRRTAADGKIDWQRPAEELFNLVRAVTQPYPGAFCAVGEHKLIVWSAEVAKGNEGQAPGRVISVDPLRIACGQDSLVITSGQRNANGLFLGGPQLANELG LVDGSLLRGAESGRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIE YTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTLFRPFNWMGPRL DRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEALARIVDNENDCCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGNFPPFA GFRDVESKAFYGAGYQDVEHRKPSIDNAKRLLNWEPTVEMSETIGNTLDFFLREAMLEIADRAKQEAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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