Pseudomonas protegens Pf-5, PFL_2834 (ccoN_3)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10422
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0045278 plasma membrane respiratory chain complex IV
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00780
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009060 aerobic respiration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10422
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10422
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004129 cytochrome-c oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR10422
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc aerobic respiration II (cytochrome c) (yeast) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfl01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc aerobic respiration I (cytochrome c) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc arsenite oxidation I (respiratory) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfl02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc Fe(II) oxidation InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.210.10 - IPR036927 Cytochrome c oxidase-like, subunit I superfamily 2 468 0.0
NCBIfam TIGR00780 JCVI: cytochrome-c oxidase, cbb3-type subunit I IPR004677 Cytochrome c oxidase cbb3-type, subunit I 9 462 0.0
FunFam G3DSA:1.20.210.10:FF:000005 Cytochrome c oxidase, cbb3-type, subunit I - - 1 469 0.0
PANTHER PTHR10422 CYTOCHROME C OXIDASE SUBUNIT 1 IPR000883 Cytochrome c oxidase subunit I 10 461 3.6E-63
SUPERFAMILY SSF81442 Cytochrome c oxidase subunit I-like IPR036927 Cytochrome c oxidase-like, subunit I superfamily 10 464 1.06E-118
Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I IPR000883 Cytochrome c oxidase subunit I 13 443 2.4E-112

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.