Pseudomonas protegens Pf-5, PFL_2658

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2658
Name
Replicon chromosome
Genomic location 2938716 - 2939717 (+ strand)

Cross-References

RefSeq YP_259765.1
GI 70730026
Entrez 3476586
INSDC AAY91931.1
NCBI Locus Tag PFL_2658
UniParc UPI000054D581
UniProtKB Acc Q4KDB8
UniProtKB ID Q4KDB8_PSEF5
UniRef100 UniRef100_Q4KDB8
UniRef50 UniRef50_Q2IUT5
UniRef90 UniRef90_Q4KDB8

Product

Feature Type CDS
Coding Frame 1
Product Name
TRAP transporter solute receptor, DctP family
Synonyms
Evidence for Translation
Charge (pH 7) -1.82
Kyte-Doolittle Hydrophobicity Value -0.317
Molecular Weight (kDa) 37040.0
Isoelectric Point (pI) 6.39

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 254 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000851 (1023 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2658

Human Homologs

References

No references are associated with this feature.