Pseudomonas protegens Pf-5, PFL_1653 (fliR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACTGCGTTCCAGATCGGCTTCATGATCTTCATTCCGTTCCTGATCATCGACCTGGTGGTGGCCAGTGTGCTGATGGCCATGGGCATGATGATGCTCTCG CCCCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTCCTCGTGGACGGTTGGGCGTTGATCATCGGTACCCTGGCGGGCAGTTTCGGTGGTGTTT AAAACCTTGTTTGCGGGTGATCGACAATGACTCCGGAAGTCGCGGTAGACCTGTTTCGCGAAGCGCTCTGGCTGACCACCATGATGGTGGCGGTGCTGGT GGTGCCCAGCTTGTTGGTGGGCCTGATGGTGGCCATGTTCCAGGCTGCCACCCAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGCCTGCTGGTGATG CTGGTGACCCTGATTGTCGCCGGGCCCTGGCTGGTGCAAACCTTCATGGAATACATCCGTCAGTTGTACGGCAGTATTCCGCAGTTGATCGGCTGAGCCC
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| DNA Sequence for Gene |
>PFL_1653
|fliR
ATGTCCCTGCTGGCGTTGACCGACACCCAGATCAGTACCTGGGTGGCGAGCTTCATGTTGCCGCTGTTCCGGGTCACCTCGCTGCTGATGGTGATGCCGG TCTTCGGGACCACCCTGGTGCCGCGGCGGGTACGCTTGTACTTTGCCCTGGCGATCACCGTGGTGATAGCGCCGGGGCTGCCGCCCATGCCCGAAGTGCA CGCCCTGGATCTCAGCGGCCTGTTGCTGGTCGCCGAACAGATCCTGATCGGCGCGGTACTGGGGTTTTCCCTGCAGCTGTTCTTCCAGGCTTTCGTGGTT GCCGGACAGATCGTGGCGATCCAGATGGGCATGGGGTTCGCTTCCATGGTCGACCCCACCAACGGTGTGTCAGTGGCGGTGATCGGGCAGTTCTTCACCA TGCTGGTAACCCTGTTGTTCCTGGCCATGAACGGCCACCTGGTGGTGTTCGAGGTGCTTACCGAGAGCTTTACCACCCTGCCGGTGGGTGGCGGCCTGAT GGTCAACCATTACTGGGAGCTGGCAGGCAAGCTCGGTTGGGTGCTGGGGGCGGCGCTGCTGCTGGTATTGCCGGCGATCACCGCGCTGCTGGTGGTGAAC ATCGCCTTTGGCGTCATGACTCGCGCGGCGCCGCAATTGAACATCTTCTCCATCGGCTTTCCCCTGACCCTGGTGCTGGGCATGGGCATCGTTTGGATCA GCCTGGCTGACATTCTCAATCAGTATCAACCGCTGGCCTCCGAGGCCCTGCAGTTCTTGCGCGAACTGGCGAGGGCACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATGGCAGAGAGCGAGAGCGGTCAGGACAAGACAGAAGAGCCCACGGAGAAACGCAAAAAGGACTCCCGGGAAAAGGGCGAGATTGCCCGCTCCAAGG AGCTCAATACCCTGGCCATCATGCTGGCGGGGGCGGGTGGTCTGCTGGTCTATGGTGGTGGCCTGGCCCTGGACCTGCTGGAAATCATGCGCCTGAATTT CTCCCTGCCCCGTGAAGTGCTGCTCAGCCCCGGGGCCATGGGCCTGTACCTGCTGCATTCGGGCAAGATCGCCATCCTGGCGGTGCAGCCGGTACTGCTG ACCCTGCTGCTGGCGGCGGTCATCGGCCCCATTTCCCTGGGCGGCTGGTTGTTCGCCGGCAAGAGCCTGGCGCCCAAGTTCAGCCGGATGAACCCGGCCA ACGGCCTCAAGCGGATGTTTTCCCCCACGGCGTTGATCGAACTGCTCAAGGCCCTGGCCAAGTTTGCCCTGGTGCTGTTCGTGGCGCTCTCGGTGCTCTC
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| Amino Acid Sequence |
>flagellar biosynthesis protein FliR
MSLLALTDTQISTWVASFMLPLFRVTSLLMVMPVFGTTLVPRRVRLYFALAITVVIAPGLPPMPEVHALDLSGLLLVAEQILIGAVLGFSLQLFFQAFVV AGQIVAIQMGMGFASMVDPTNGVSVAVIGQFFTMLVTLLFLAMNGHLVVFEVLTESFTTLPVGGGLMVNHYWELAGKLGWVLGAALLLVLPAITALLVVN IAFGVMTRAAPQLNIFSIGFPLTLVLGMGIVWISLADILNQYQPLASEALQFLRELARAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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