Pseudomonas protegens Pf-5, PFL_1649 (fliN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003774 motor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009288 bacterial-type flagellum
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009425 bacterial-type flagellum basal body
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071973 bacterial-type flagellum-dependent cell motility
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02040 Flagellar assembly 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.30.330.10:FF:000001 Flagellar motor switch protein FliN - - 62 153 4.1E-50
NCBIfam TIGR02480 JCVI: flagellar motor switch protein FliN IPR012826 Flagellar motor switch FliN 70 145 1.2E-32
Gene3D G3DSA:2.30.330.10 - IPR036429 SpoA-like superfamily 64 153 2.2E-30
SUPERFAMILY SSF101801 Surface presentation of antigens (SPOA) IPR036429 SpoA-like superfamily 70 151 4.97E-25
Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPR001543 Flagellar motor switch protein FliN-like, C-terminal domain 74 143 5.6E-24
PANTHER PTHR43484 - - - 64 153 8.9E-33
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 119 134 6.6E-28
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 73 89 6.6E-28
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 90 106 6.6E-28
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 106 119 6.6E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.