Pseudomonas protegens Pf-5, PFL_1643
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfl02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfl02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13466 | STAS domain | IPR002645 | STAS domain | 16 | 95 | 3.6E-12 |
| SUPERFAMILY | SSF52091 | SpoIIaa-like | IPR036513 | STAS domain superfamily | 7 | 100 | 4.12E-21 |
| PANTHER | PTHR33495 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED | - | - | 7 | 100 | 1.1E-12 |
| CDD | cd07043 | STAS_anti-anti-sigma_factors | - | - | 6 | 100 | 2.89763E-20 |
| Gene3D | G3DSA:3.30.750.24 | STAS domain | IPR036513 | STAS domain superfamily | 3 | 101 | 5.3E-20 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.