Pseudomonas protegens Pf-5, PFL_1556
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACGACCCCTCGACTATATCCAGCGCTCCCCCTGTCCTTAAAGGCCCATTCCTACTGGATCGTCTGCTTCTGCCGTCAGGCAATTCCTAATTTACCGAGAG GATCTTTTCGAGCCGGTCCTCCGCGATTTTCCTGGCTTACAATGCCGTCCCGCATTGCTCGCCACGGTTCATTCCAGCGTGGCAGCCAACAGTCGAAACC TACCCAAAGGAAGACTTTCACCTGGTGGATCAAGGTAGCGCTGCCATTGAAGGCACAGATCTGAATGCCAGTAACATCGAGCAGCTCGAAACCATCACCC GCAGCGCTAAGAGCAACGCCGAGATCCAGGCTTAGCATCTGGCGGTGATCGCCGAGGCCTAAAATTTCGACGCTAAGACCCTCAGGACCACGGCCCCAAT CCCTGCGCAGATCGCCGGCCTGCCGGACGCCGCGAGCCTGTCCCGGCCGCACAAGTACCTGATCGAAACCAACCCGGCGCTGACCCACCTCAAGCAGTTC
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| DNA Sequence for Gene |
>PFL_1556
ATGAGCTCGGACTACCTACTGTCCAACCTCGGCTACAACCCGGATGAAAGCGCCAAACGCCTGGGGGACGGTTTCTACGAACAGAAACTCATCCAGCAAG CCATGGTGGCCCGCACCGGCCAGCGCTTTATCGACGGCCAGGACAGCAACGAAAAACTCTTCAAGCACCTGATGGACAACGCCCTCCAGAGTAAGCAACA GCTTGATCTCTCGGTGGGCGTAACCCTGACCTCCGAACAAGTCGCCGCCCTGACCCACGACATCGTCTGGCTGGAAAGCCATGAAGTGAACGGCGAACAG GTGCTGGTGCCAGTGCTGTACCTGGCACAGGCCAACAACCGCCTGGCGCCCAACGGCTCCCTGATCGCGGGCAAGGACGTGAGTCTGATTGCCGGCAAGG ACTTGAACAACGTCGGCACCCTGCGCGCGGCCAATGACCTGTCGGCGGTGGCGGGGGCGAACCTGGTCAATAGTGGGTTGGCAGAGGCGGGCAACCGCCA GGACCTGCTGGCGGGCGACTACCTGGTCAACCGCGCCGGCGGCATCATCGCCGGGCGCGACGTCACCCTGACCACCACCCAGGGCGACGTGATCAACGAC CGCACCTTGACCACCCACCAGAGCAGCAGCGCAGCCTACGTCCGCGAGCAGCGTCGCGACTTCCTCGACAGCGCCGCCCGCATCGAAGCCGGTAACAGCC TGAGCATCGATGCCGAACGGGACTTCGACAGCAACGGCAGCGTCCTGCACAGCGGTGGCGACACCCGCATCAAGGCCGGTCGCAACGTCAGCCTCAACGC CGTCGAACAAGTGGTCAGCAACGACCGTGGCATCGGCAACCTCGACCAGAGCAAAACCCAGCACGGCGCCACCCTGGAGAGCGGCGGCGACCTGAGCATT GAGGCCGGTGGCAACGTCACCGCGATCGCCAGCCAGATCGACGCCAAGGGCGACGTCTCGATGACGGCCAAGGACAACCTGACCCTGGCCTCGGCCGCCA ATGAACAACACTGGGCCAGCAAGACCGGTACCACCAAGAGCGAAGAGGATCGCGTCCACCAACAAGCCACCACGGTGACAGCGGGCGGGGATGTGACGCT CAAGTCCGGCCAGGACATGACCCTGATTTCCAGCAAGGTCAAGGCCGGGGATGAAGCCTATCTGGTGGCCGGTGGCGAACTGAACCTGCTGGCGGAGCAG GACAGTGAGCATTCTCTGTATGACATGAAGAAGAAGGGGGGCTGGGGCAGCAAGGAAACCAAGCGCGATGAAGTCACCCGGGTTACCCATGTCGGCAGTG AGATCAGCGCTGGTGGCAACCTGACGCTCAAGAGCGATGGTGACCAGAGGTATCAGGTCGCCAAGCTGGAGAGCGGCAAGGACATCACCCTGGATAGCGG CGGCGCTATAACCTTTGAAGGGGTGAAGGATCTGCACCAGGAGAGTCACGAGAAGACCAATAACAACTCCTTCTGGGTGTCCTCCAAAGGCAAGGGCAAT ACCGACGAAACCCTGCGCCAGACCCAGATGGTGGCGGCCGGCAATATCGTGATCAAGGCCGTTGATGGCCTGAAGATCGATGTGAGGCAGGTCAACCAGC AAACCGTCAGCCAGAGCATCGACGCGATGGTCAAGGCCGACCCGCAACTGGCGTGGCTCAAAGAGGCCGAGAAACGCGGCGATGTTGATTGGCGGGTGGT GAAGGAGATCCACGACTCCTACAAGTACAGCAACTCCGGGCTGGGGCCGGCTTCGCAGATCATTATTGCGATTGTGATGGGCGCCGTGATTGGGCCTATG GCGGGTGGTCTGGTCGGTGGTGGTACTACCGGTGCGGTTGTGGGAGCTGTTGCGACGGGGGCGTCGACCAATGCGACCGTCAGCTTTATCAATAACGGTG GCAACCTTGGTGCTGTATTCAAGGATGTGACCTCTTCCAACGCGATGAAAGGGTATGTGATCTCTGGTGTTACTGCGGGGCTTACATCTGCTTACTTTGA CGGTTGGACTGGCACTCATACTGATACGGCAACGAATCAGGTTATTGGGCCGAACCTCAGCACTTGGACAGGTGTTGGGCAATTTGCTGCGAGCCAAACA CTGCAGAGCGGCACTTCCATGCTGTTGAGCAAGGCTCTGGGGCAGGGTGGCAGTGCAAGTGATGCACTGAAAAGTGCCTTGTTCAACACCTTGGCGGCGG CCAGCTTCAATGCGGTGGGTGATTACACCAAAGGTGTTTTGAACGACGGCATGCCTCTCAAAATATTGATCCACGCCATGGTTGGCGGCCTTCTGTCAAA AGCAACTGGCGGCGACTTCAAGACCGGCGCTTTGGCGGCGGGTGTAAATGAAGCTGTGGTTGTCCAGTTGGACAAACTGGTGAGTGGTAACAAGACACTA CTGTCCATGAACTCGCAGATTGTGGGTGTGCTAGCAGCTGCTGCGCAGAGAGATGCGGATGCGCAATCGATAGAGAAGGGCGGCTGGGTTGCAAAAAACG CAACGCAGTACAACTATGCAGGGCATCAAGAAATTGACGACTTAGAGGAGCAGGCGCGTAACTGTAAAGCTCTTGGAAACTGTGATGAGGTCAGGGAGCG GTTTAGAAAACAGAGCGTTAAGCTTGATGATGAATTGGCGGCCGATTGTGCTAAAAATCCAGCCCTTTGCACGTTCTTGTATGGGGATCTCCTGCATGAC AGAAATAGCCTGCAGGAGCGTCTTGGAAAGATGTATTTTGATGACAGTATTCCTTCGATGTTTAAGGAAGACTTGCATCGTTATCAGTTGCAGAATACAG CTGCTATAGGGGTTCTCATTCAGGCTCAGACTGAGTCTGCTCTTGAGAGTAAAGGAGTTTCGCCGGAAAAAGCTGCCTGGGTAAGTAAGCTTGTTGCGGC AATGGGCGGTTTTCTGGGCGGGAAGGGTAAAGGTGGAAACGGTGCTACAAGTGGAAAAGTAGCGGCTTCAGGTACTAGTAAACCTATTATTGATCATGTT GTTGTGTCTTCAGGTAAGGCTCCTAAAACAGCAGCACCAAACTCTATATATGAAATCTCTCGTGCGGATGGAAGTAAAAGTGTAACTTACTATGATGGTC AAGGACGGACCTTTTCACGGGAAGACTATGGCCAACAAAGAAGTCACGGTAGTTTAGGGTATGGTGTGGATGGGCGAGCAGTGCCCCATGAGCATAAGAT TGAATATAATAGTCGGGGGTTTGTGGATAAACAGTATTATCGCGAAATCGATGCTGATGGTAAGCCTGTTGGAGCTTGGATTATAGATAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGAGGACGGTTATGTCAAATGATGTTTGTGGTTATGTTTACCCTGCTCCAAGTCTGGAGTCCTGGATGGCGTTGGAAGAATATATCTCAAAAAGTAAAT TGGGGATTCAGAGGATAAGGAGTAATGAGCTTTTTAATTATCCGTCAGAATTTATTCCTGATATAGACACTTTTATTTTTTTGATAGGGGATAGTCCGGG GTATCCTAATGCAACATATTTGACGGATTATAATGAATATGATCCTGACTTCTCAGATATTGGGTTTCCTTGTCACCCTAAAGACAGGGTTAAGATATTG TTGGGTGCTATAGGGGATATATTTTCAATATGTAAGTCTGAAAAGATATGTTTTTCTATAACGGATAGTAGTCAGGTGGAGGTCGTTAAAAGAATTTGCT TTTCTGAGATGTTTGATGTGGTGATTTCTGACTTTGAGAAGTATCAAGCCCCTCCTGATACTCTTTATGAAGTAAGGCGCGGTGGTTGTATTTAAAGTCA
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| Amino Acid Sequence |
>filamentous hemagglutinin
MSSDYLLSNLGYNPDESAKRLGDGFYEQKLIQQAMVARTGQRFIDGQDSNEKLFKHLMDNALQSKQQLDLSVGVTLTSEQVAALTHDIVWLESHEVNGEQ VLVPVLYLAQANNRLAPNGSLIAGKDVSLIAGKDLNNVGTLRAANDLSAVAGANLVNSGLAEAGNRQDLLAGDYLVNRAGGIIAGRDVTLTTTQGDVIND RTLTTHQSSSAAYVREQRRDFLDSAARIEAGNSLSIDAERDFDSNGSVLHSGGDTRIKAGRNVSLNAVEQVVSNDRGIGNLDQSKTQHGATLESGGDLSI EAGGNVTAIASQIDAKGDVSMTAKDNLTLASAANEQHWASKTGTTKSEEDRVHQQATTVTAGGDVTLKSGQDMTLISSKVKAGDEAYLVAGGELNLLAEQ DSEHSLYDMKKKGGWGSKETKRDEVTRVTHVGSEISAGGNLTLKSDGDQRYQVAKLESGKDITLDSGGAITFEGVKDLHQESHEKTNNNSFWVSSKGKGN TDETLRQTQMVAAGNIVIKAVDGLKIDVRQVNQQTVSQSIDAMVKADPQLAWLKEAEKRGDVDWRVVKEIHDSYKYSNSGLGPASQIIIAIVMGAVIGPM AGGLVGGGTTGAVVGAVATGASTNATVSFINNGGNLGAVFKDVTSSNAMKGYVISGVTAGLTSAYFDGWTGTHTDTATNQVIGPNLSTWTGVGQFAASQT LQSGTSMLLSKALGQGGSASDALKSALFNTLAAASFNAVGDYTKGVLNDGMPLKILIHAMVGGLLSKATGGDFKTGALAAGVNEAVVVQLDKLVSGNKTL LSMNSQIVGVLAAAAQRDADAQSIEKGGWVAKNATQYNYAGHQEIDDLEEQARNCKALGNCDEVRERFRKQSVKLDDELAADCAKNPALCTFLYGDLLHD RNSLQERLGKMYFDDSIPSMFKEDLHRYQLQNTAAIGVLIQAQTESALESKGVSPEKAAWVSKLVAAMGGFLGGKGKGGNGATSGKVAASGTSKPIIDHV VVSSGKAPKTAAPNSIYEISRADGSKSVTYYDGQGRTFSREDYGQQRSHGSLGYGVDGRAVPHEHKIEYNSRGFVDKQYYREIDADGKPVGAWIIDK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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