Pseudomonas protegens Pf-5, PFL_1533

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_1533
Name
Replicon	chromosome
Genomic location	1722304 - 1722918 (+ strand)

Cross-References

RefSeq	YP_258660.1
GI	70728911
Entrez	3476699
INSDC	AAY90816.1
NCBI Locus Tag	PFL_1533
UniParc	UPI000054D13C
UniProtKB Acc	Q4KGH3
UniProtKB ID	Q4KGH3_PSEF5
UniRef100	UniRef100_Q4KGH3
UniRef50	UniRef50_Q4KGH3
UniRef90	UniRef90_Q4KGH3

Product

Feature Type	CDS
Coding Frame	1
Product Name	sigma-70 family RNA polymerase sigma factor
Synonyms
Evidence for Translation
Charge (pH 7)	-6.41
Kyte-Doolittle Hydrophobicity Value	-0.185
Molecular Weight (kDa)	22.9
Isoelectric Point (pI)	5.33

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 421 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002328 (417 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_1533 Search term: sigma-70 family RNA polymerase sigma factor

Human Homologs

References