Pseudomonas protegens Pf-5, PFL_1468 (cupB6)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1468
Name
cupB6
Replicon chromosome
Genomic location 1650646 - 1651788 (+ strand)

Cross-References

RefSeq YP_258595.1
GI 70728846
Entrez 3475757
INSDC AAY90751.1
NCBI Locus Tag PFL_1468
UniParc UPI000054D0FB
UniProtKB Acc Q4KGN8
UniProtKB ID Q4KGN8_PSEF5
UniRef100 UniRef100_Q4KGN8
UniRef50 UniRef50_Q4KGN8
UniRef90 UniRef90_Q4KGN8

Product

Feature Type CDS
Coding Frame 1
Product Name
fimbrial subunit CupB6
Synonyms
Evidence for Translation
Charge (pH 7) -0.22
Kyte-Doolittle Hydrophobicity Value -0.054
Molecular Weight (kDa) 40941.4
Isoelectric Point (pI) 6.90

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 3 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000955 (1577 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1468
Search term: cupB6

Human Homologs

References

No references are associated with this feature.