Pseudomonas protegens Pf-5, PFL_1467 (cupB5)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCCTGCAGTACCTGAGCCCGCGCTTTCAGCTCTATGGCCAGTTCAACGGCCAATGGTCCTCGACCAACCTGGACAGCTCGGAAAAATTCGGCATCGG CGGCCCCTTCGATGTGCGCGCCTATCCCCAGGGGACCAGCAGTGGCGACCAGGGCTGGCAGGCCAGCCTGGAACTGCGCTTTCTCCTGGCCCCGCGCTGG CAGCTCAAGGCGTTTGTCGATCACGGCGCGGTGCAGGTCAACAAGAGCCCCTGGATCCACGACGAGAACCGCCGCCAGTTGTCGGGCGCCGGTGTGGGTG CCAGTTGGAGCGGTCCTTCGCAACAGATCAGCGTGACCAGTGCCTGGGCCCTGGACAACAACCAGGAAGGCAGCGGGCCCGAGCGCACGCCGCGGATCTG GGCCAGCGCGACACAGTATTTCTGAAGGCCGGCGTGTGCTTCGGAGGTGGTGCCGTCCTGCATAGGTTGCAGGGCGTTAATAAGTAGATAAGGAGTCAAC
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| DNA Sequence for Gene |
>PFL_1467
|cupB5
GTGAATAAGGTTTATGCATTGGTGTGGAATCAGGCCCAGGGCTGCTGGAGTGTGACCGACGAGGGCGCACGCCGTCGTCGCCGCTCCGGAACACGCAAGG GCCTGGTGGTGATGGTGGCCGGGCTGCTGGGCATTGGTGTTCTGCCTGTGGCCTTCGCGTTGCCGACGGGAGGCACGGTGGTCTCCGGCACGGCGGACAT CCTGACGTTCGACAATGGCAAGCAGATGTCGATCAACCAGCACACTGACAAGCTGATCACCAACTGGAACGACTTCAGCGTGAACCGTGGCCAGACGGTG ACCTTCAGCCAGCCGACCAAGACCTCGGTGGCCCTGAACCGGGTGATTGGCGTCAATGGCAGTAACATCCAGGGGCAGATCAATGCCAACGGCCAGGTGT TCCTGATCAACCCCAACGGGGTGGTATTCGGCAACAACGCCCAGGTCAACGTCGGTGGCCTGGTGGCCTCGACCCAGAACATCACCGATGCCAACTTCAC CGCCGGCAACTACAAATTCGCCGGGACCTCGCAGGCTGAAGTCGTCAACAACGGCATGATTACCGCCACCGATGGCGGCGGCGTGGCGCTGATCGGCAAG ACTGTGCGCAACGAAGGTGACATCAAGGCGCAGAAGGGCAGCGTGGCCCTGGGTGGCGGCAACGAGTTCACCGTCAGCTTCGACAGCAACAACCTGCTGG ACCTGAAAGTCGATGCCGCGGCGATCGATGCGCTGGTCAGCAACGGCGGGCTGCTCAAGGCCGACGGCGGGCAGGTATTGATGACCGCCAAGAGCGCAGG CTCGATGCTGCAGACCGTGGTCAACAACCAGGGCGCCATCGAAGCCAACACCCTGTCGCGCAAGGCCGGCAAGATCACCCTGGACGGCGGTGACGTCGGC GTGGTCAACGTCGGCGGCTCGCTGAGCGCCAACGCACTGACTGCCATCGGCGATGGCGGCGTGGTGGAAACCAAGGGCGCCACCACCAAGGTGCAACTGG CCGCCCGGGTCAACACCCTGGCCAACAATGGCCGGGCCGGGACCTGGAAGATCAGCTCTTCGGACGTCACGGTCAATCCGACCTCCACGCCCGGTGAAAC CACGGTGTATGCCGATACCCTGTCGCACAACCTGGCTACCACCAACATCGAGTTGAACAGCAAGGCCGGCAACGTGTCGATCGATGGTGATATCGCCTGG GCCAGCGGCAATCAATTGAGCGTGGCCTCGGCCCAGGACATCAGCCTCAACAAGAACCTCAAGAGCAGCGGTGCGGGCGCCCGTATCGAACTCAATGCCA ATCGGGACATCAAGATCAATGGTGCAGTAGCGCTGACCGGGGTCAACAGCAGCCTGGGCCTGGACTACGGCAACAGCTACGCCCTGGGGCCGAAGGGCCA GGTCACCCTGTCCGGCAGTGGCGCCTGGTTCGACGCCAATGGCGACCTGTACAAGGTGATCCAGAACGCCGCGCAATTGCAGGCGATCGGTACCAGCCTC GACGGCCTGTATGTGCTGGGCAACGACATCAAGGGCACCGGCAGCATCAAGTCCATTGGTGGCAGCCGAGAGTTCAACGGGGTCTTCGACGGCCTGGGCA ATACCATCAGTGGTTTCACGGTCAATACCGACGGCCCTTACGGCGGTCTGTTCGGCCGCTCGTCCGGCACCATCAGCAACCTCAAGCTGGCGTCGATGAA CATCTACGGTGCCACCTCCAACGCAGGCTTCGGCAAAATCGGTGGTCTGGTCGGCGTAAACACCGGCCGCATCGAAAACGTCAGTGGCACCAACCTCAAC GTCTTCGCCAACAGCAACCAGAACAACATTGTCGGCGGCCTGGTCGGTGTCAACGCCGGCGGCACCATCGATCGTGGCTCGATGGCCGGTACGGTGACCG GTAATGCCAACACCTCCGCCGTCGGTGGGCTGGCGGGGGAAAACAACGTCGCTTCGACTGGCCTCGGCACCATTACCAACAGCACCACCGACGTGCGGGT GCTGGGCACCATGCAGGTCACCACCAATGGCGGCATGGGCGGCCTGGTAGGCGTCAACAAGGGCGGCCTGATTAGCGACTCTTCGAGTGCTGGCACCGTC GGTACCGGGTTCAACCGTTACGTCCAGGACCCGAACCTGGGTGGCCTGGTGGGTTACAACCAGGGTGGCAGGATCGAACGCGCCAGCTCCTCGGTCGGCG TCTGGGGGTACACCGCCAGCCGTATCGGCGGCCTGGTGGGCTTCAACAACAACGGCGCTATCGTCGACTCCAGCGCCAGTGGCGCGGTGGTCGGTGCGGG CTCCGTGGCTGCCGGTGGCCTGGTGGGCTGGAACCAGAACAGCGAGCTCAATAACGTCAAGGCCACAGGCAAGGTCAGCGATTCGACCGGTGCCAACGTC GGCGGGCTGGTGGGCAAGAACGACAACAGTCGGATCCACACGGCTGAAGTGACAGGTGATGTGGTCGGCGGAGCCAGCGGCAACATCGGTGGCCTGATCG GGCACAACTTTGGTGGCAACACCGAATATGTCGTGGCCCGTGGCAAGGTCAGCGGCGGCAACCTCAGCTACGTCGGCGGCCTGGTGGGCTACAACGACGG TGACCTGAGTTCGGCCGAGGCCAGCGGTGACGTCAGCGGCGGCGCCAACAGCTTTGTCGGCGGGCTGGTGGGGACCAACGGCGACTTTGTCGATCACCGG ATCAACAGTGCCTCGGCCAAAGGCAATGTGGTGGGCGGTAGCCAGAGTTCGGTGGGTGGCCTGGTCGGCCAGAACAATTCGTTCATCACCAACTCCCTGG CCAATGGTCAGGTGAGCGGCGGCACCTATGCCCGCCTGGGTGGCCTGGTCGGCTTGAACATGGGCGATCTGCGCAACTCCGTGGCCTACGGCAACGTCAA GTTCGTGTCGAACTACGCCCAGACCTACGGCGGCCTGGTCGGGGTCAACTACGGCGACATGCGCTACAACACGGCGCTGGGCCTGGCGACTCAGGTACCC GCGGTCGGCCTGAACCAGGGCGACATTCGCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGATCCACAACCACTGATCCGAGGAATGGCAGTTGCCCCCGGTGCGCCTGGCGCACCGGGTTCCGGCTGCTGGCGGGTACCTGCTTGTCTCGTTCCTTGA TGATCTTTTTTAAGGGTGGCCGCAAGCAGCCGGCCACTGTTGGGCAATCCATCTCGTTTGTGCAGAACGCTGCCCTTGTCAGGGGCGGTATCACCAAGGC GCAGACAGGGAGAAAGACAGATGATTCGCCAATGGCTGAGGCTTGTAGCCGATTGCAGACCGCTGCCCCTGTGGGTTCATGGCGTCATGCTCGCAGGGGT GCTTTGCGGCTGGGGCGGCGCAGAGGCGCAAGCGGCCTCGTTGAACGGTTATGCCAGGGACTGCAACCTCAGCAGCAAGGCCGGTTCCCCCTGGAGGCTG GTCAACCCGTTGAACACCAATACCCCGGTGGGAACCGTGTTGTGGGAGCGTACGGTGACCTTGCATACCAGTTTCAACCTGGCGATCTCCGGGAAACCGC
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| Amino Acid Sequence |
>adhesive protein CupB5
MNKVYALVWNQAQGCWSVTDEGARRRRRSGTRKGLVVMVAGLLGIGVLPVAFALPTGGTVVSGTADILTFDNGKQMSINQHTDKLITNWNDFSVNRGQTV TFSQPTKTSVALNRVIGVNGSNIQGQINANGQVFLINPNGVVFGNNAQVNVGGLVASTQNITDANFTAGNYKFAGTSQAEVVNNGMITATDGGGVALIGK TVRNEGDIKAQKGSVALGGGNEFTVSFDSNNLLDLKVDAAAIDALVSNGGLLKADGGQVLMTAKSAGSMLQTVVNNQGAIEANTLSRKAGKITLDGGDVG VVNVGGSLSANALTAIGDGGVVETKGATTKVQLAARVNTLANNGRAGTWKISSSDVTVNPTSTPGETTVYADTLSHNLATTNIELNSKAGNVSIDGDIAW ASGNQLSVASAQDISLNKNLKSSGAGARIELNANRDIKINGAVALTGVNSSLGLDYGNSYALGPKGQVTLSGSGAWFDANGDLYKVIQNAAQLQAIGTSL DGLYVLGNDIKGTGSIKSIGGSREFNGVFDGLGNTISGFTVNTDGPYGGLFGRSSGTISNLKLASMNIYGATSNAGFGKIGGLVGVNTGRIENVSGTNLN VFANSNQNNIVGGLVGVNAGGTIDRGSMAGTVTGNANTSAVGGLAGENNVASTGLGTITNSTTDVRVLGTMQVTTNGGMGGLVGVNKGGLISDSSSAGTV GTGFNRYVQDPNLGGLVGYNQGGRIERASSSVGVWGYTASRIGGLVGFNNNGAIVDSSASGAVVGAGSVAAGGLVGWNQNSELNNVKATGKVSDSTGANV GGLVGKNDNSRIHTAEVTGDVVGGASGNIGGLIGHNFGGNTEYVVARGKVSGGNLSYVGGLVGYNDGDLSSAEASGDVSGGANSFVGGLVGTNGDFVDHR INSASAKGNVVGGSQSSVGGLVGQNNSFITNSLANGQVSGGTYARLGGLVGLNMGDLRNSVAYGNVKFVSNYAQTYGGLVGVNYGDMRYNTALGLATQVP AVGLNQGDIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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